miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 91190 0.66 0.983512
Target:  5'- cCGugGCGCGGCGUuugGUuGCACGCg--- -3'
miRNA:   3'- -GUugCGCGUUGUA---CGuUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 46450 0.68 0.942087
Target:  5'- gAACGCGcCGACGuguUGCAcagcaucauuauguACGCGUUGAAc -3'
miRNA:   3'- gUUGCGC-GUUGU---ACGU--------------UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 105081 0.68 0.933366
Target:  5'- --uCGCGCAACAUGCAAUG-GCUa-- -3'
miRNA:   3'- guuGCGCGUUGUACGUUGUgCGAcuu -5'
22864 3' -51 NC_005137.2 + 106403 1.06 0.008996
Target:  5'- cCAACGCGCAACAUGCAACACGCUGAAc -3'
miRNA:   3'- -GUUGCGCGUUGUACGUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 50842 0.66 0.976604
Target:  5'- aCAACGCGCAAacgGCGGCAaCGUUu-- -3'
miRNA:   3'- -GUUGCGCGUUguaCGUUGU-GCGAcuu -5'
22864 3' -51 NC_005137.2 + 129985 0.66 0.976604
Target:  5'- gAGCGCGCugaaaGUGCGGCACugaaacggGUUGAAu -3'
miRNA:   3'- gUUGCGCGuug--UACGUUGUG--------CGACUU- -5'
22864 3' -51 NC_005137.2 + 11857 0.67 0.970946
Target:  5'- -cAUGCGCAaucugugcggacACAUGUAauACGCGCUGc- -3'
miRNA:   3'- guUGCGCGU------------UGUACGU--UGUGCGACuu -5'
22864 3' -51 NC_005137.2 + 6621 0.67 0.967776
Target:  5'- aCGACGCGCGcGCA-GCAugACGUUa-- -3'
miRNA:   3'- -GUUGCGCGU-UGUaCGUugUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 99298 0.67 0.960716
Target:  5'- aCGACGCG-AACGUGC-ACACGUcGGu -3'
miRNA:   3'- -GUUGCGCgUUGUACGuUGUGCGaCUu -5'
22864 3' -51 NC_005137.2 + 15095 0.68 0.950031
Target:  5'- aCAACGCGCAugGCAucguugauaaaauggUgGCAACACGCg--- -3'
miRNA:   3'- -GUUGCGCGU--UGU---------------A-CGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 66453 0.67 0.956812
Target:  5'- aAACGUGUcgcuuAACGUGCG-CACGUUGGu -3'
miRNA:   3'- gUUGCGCG-----UUGUACGUuGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 2281 0.67 0.964368
Target:  5'- aAACGCGaacacucuaagGGCGUGCAcgacgGCACGUUGGAa -3'
miRNA:   3'- gUUGCGCg----------UUGUACGU-----UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 45529 0.66 0.981408
Target:  5'- --gUGCGUcACGUGCAGCAauCGaCUGAAc -3'
miRNA:   3'- guuGCGCGuUGUACGUUGU--GC-GACUU- -5'
22864 3' -51 NC_005137.2 + 26546 0.67 0.956812
Target:  5'- -cACGUGCAACAaGuCGugGCGCUGc- -3'
miRNA:   3'- guUGCGCGUUGUaC-GUugUGCGACuu -5'
22864 3' -51 NC_005137.2 + 83210 0.66 0.979108
Target:  5'- gCAACGCGguGaAU-CAACACGUUGAc -3'
miRNA:   3'- -GUUGCGCguUgUAcGUUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 26130 0.67 0.967776
Target:  5'- uCGACGgGUgcugAGCAuUGCAACGCGCaaaUGAAa -3'
miRNA:   3'- -GUUGCgCG----UUGU-ACGUUGUGCG---ACUU- -5'
22864 3' -51 NC_005137.2 + 112778 0.68 0.952652
Target:  5'- aCGACGCGCAcACA-GCAACACcGCc--- -3'
miRNA:   3'- -GUUGCGCGU-UGUaCGUUGUG-CGacuu -5'
22864 3' -51 NC_005137.2 + 109381 0.68 0.933366
Target:  5'- --uUGCGCAACAaaauaguuCGACGCGCUGGGu -3'
miRNA:   3'- guuGCGCGUUGUac------GUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 97103 0.66 0.976604
Target:  5'- aCAACGUGCGGguUGUAGCGuCGCa--- -3'
miRNA:   3'- -GUUGCGCGUUguACGUUGU-GCGacuu -5'
22864 3' -51 NC_005137.2 + 83291 0.67 0.970946
Target:  5'- aCAGCGCGgucaAACAggGCGACcCGCUGu- -3'
miRNA:   3'- -GUUGCGCg---UUGUa-CGUUGuGCGACuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.