Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22864 | 3' | -51 | NC_005137.2 | + | 24603 | 0.72 | 0.765804 |
Target: 5'- uCAGCGUGUuGCAUGUuGCGCGUUGGc -3' miRNA: 3'- -GUUGCGCGuUGUACGuUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 31590 | 0.72 | 0.775832 |
Target: 5'- aCAuCGCGacaAugAUGCAacGCACGCUGGAu -3' miRNA: 3'- -GUuGCGCg--UugUACGU--UGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 40109 | 0.72 | 0.795437 |
Target: 5'- -cGCGCGCAACGUGCu-UACGCa--- -3' miRNA: 3'- guUGCGCGUUGUACGuuGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 12212 | 0.71 | 0.814371 |
Target: 5'- -cACGCGC-GCAUGUAACGCuucaucGCUGGAu -3' miRNA: 3'- guUGCGCGuUGUACGUUGUG------CGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 2485 | 0.71 | 0.82356 |
Target: 5'- -uAUGCGCcGCGUGCGGCAuggUGCUGGu -3' miRNA: 3'- guUGCGCGuUGUACGUUGU---GCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 26669 | 0.7 | 0.858241 |
Target: 5'- aCGACGaCGCAcgcACGUGCgaacguuugAugGCGCUGAAc -3' miRNA: 3'- -GUUGC-GCGU---UGUACG---------UugUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 11264 | 0.7 | 0.881838 |
Target: 5'- cCAGCgGCGCuGACGUccGCuACGCGCUGAc -3' miRNA: 3'- -GUUG-CGCG-UUGUA--CGuUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 16773 | 0.68 | 0.952652 |
Target: 5'- uGACG-GCAccGCGuuUGcCAACACGCUGGAu -3' miRNA: 3'- gUUGCgCGU--UGU--AC-GUUGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 90172 | 0.68 | 0.952222 |
Target: 5'- -cGCGUGCAACGcGUuacaauucucacaAACGCGCUGGu -3' miRNA: 3'- guUGCGCGUUGUaCG-------------UUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 64550 | 0.68 | 0.952222 |
Target: 5'- cCAACGUGCGcACGUuaaGCGACACGUuuccuauUGAGa -3' miRNA: 3'- -GUUGCGCGU-UGUA---CGUUGUGCG-------ACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 117593 | 0.68 | 0.943545 |
Target: 5'- uGACGgGCGACGUGU-ACGCuGUUGAu -3' miRNA: 3'- gUUGCgCGUUGUACGuUGUG-CGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 100049 | 0.68 | 0.938591 |
Target: 5'- gCGGCGCGCGgcGCGUuCAGCAUGCUu-- -3' miRNA: 3'- -GUUGCGCGU--UGUAcGUUGUGCGAcuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 110829 | 0.68 | 0.933366 |
Target: 5'- cCGACGCGCAAgA-GUcguGCGCGCUGu- -3' miRNA: 3'- -GUUGCGCGUUgUaCGu--UGUGCGACuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 83291 | 0.67 | 0.970946 |
Target: 5'- aCAGCGCGgucaAACAggGCGACcCGCUGu- -3' miRNA: 3'- -GUUGCGCg---UUGUa-CGUUGuGCGACuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 129985 | 0.66 | 0.976604 |
Target: 5'- gAGCGCGCugaaaGUGCGGCACugaaacggGUUGAAu -3' miRNA: 3'- gUUGCGCGuug--UACGUUGUG--------CGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 50842 | 0.66 | 0.976604 |
Target: 5'- aCAACGCGCAAacgGCGGCAaCGUUu-- -3' miRNA: 3'- -GUUGCGCGUUguaCGUUGU-GCGAcuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 97103 | 0.66 | 0.976604 |
Target: 5'- aCAACGUGCGGguUGUAGCGuCGCa--- -3' miRNA: 3'- -GUUGCGCGUUguACGUUGU-GCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 83210 | 0.66 | 0.979108 |
Target: 5'- gCAACGCGguGaAU-CAACACGUUGAc -3' miRNA: 3'- -GUUGCGCguUgUAcGUUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 45529 | 0.66 | 0.981408 |
Target: 5'- --gUGCGUcACGUGCAGCAauCGaCUGAAc -3' miRNA: 3'- guuGCGCGuUGUACGUUGU--GC-GACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 106403 | 1.06 | 0.008996 |
Target: 5'- cCAACGCGCAACAUGCAACACGCUGAAc -3' miRNA: 3'- -GUUGCGCGUUGUACGUUGUGCGACUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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