miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 35239 0.7 0.896316
Target:  5'- aAACGuCcCGACGUGCGACGCccGCUGAu -3'
miRNA:   3'- gUUGC-GcGUUGUACGUUGUG--CGACUu -5'
22864 3' -51 NC_005137.2 + 66858 0.7 0.896316
Target:  5'- aAACGCGCAGgGUGCGcuucCACGCa--- -3'
miRNA:   3'- gUUGCGCGUUgUACGUu---GUGCGacuu -5'
22864 3' -51 NC_005137.2 + 24002 0.69 0.903164
Target:  5'- --cUGCGCAGCGUuugcGCAAcCACGUUGAu -3'
miRNA:   3'- guuGCGCGUUGUA----CGUU-GUGCGACUu -5'
22864 3' -51 NC_005137.2 + 99619 0.69 0.903164
Target:  5'- uGACGCGCAACGUGCAAaucaACuCgGAc -3'
miRNA:   3'- gUUGCGCGUUGUACGUUg---UGcGaCUu -5'
22864 3' -51 NC_005137.2 + 67370 0.69 0.9221
Target:  5'- gCGAUGCGCGACcgucgccGCGGCgGCGUUGAAu -3'
miRNA:   3'- -GUUGCGCGUUGua-----CGUUG-UGCGACUU- -5'
22864 3' -51 NC_005137.2 + 57353 0.69 0.9221
Target:  5'- uUAGCGCGCGAUucg-GACACGUUGAc -3'
miRNA:   3'- -GUUGCGCGUUGuacgUUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 32987 0.69 0.927869
Target:  5'- gCAGCGCcCGACGUGC---ACGCUGGc -3'
miRNA:   3'- -GUUGCGcGUUGUACGuugUGCGACUu -5'
22864 3' -51 NC_005137.2 + 3439 0.69 0.927869
Target:  5'- --uCGCGCAGCAUuuGGCGCGCUu-- -3'
miRNA:   3'- guuGCGCGUUGUAcgUUGUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 110829 0.68 0.933366
Target:  5'- cCGACGCGCAAgA-GUcguGCGCGCUGu- -3'
miRNA:   3'- -GUUGCGCGUUgUaCGu--UGUGCGACuu -5'
22864 3' -51 NC_005137.2 + 105081 0.68 0.933366
Target:  5'- --uCGCGCAACAUGCAAUG-GCUa-- -3'
miRNA:   3'- guuGCGCGUUGUACGUUGUgCGAcuu -5'
22864 3' -51 NC_005137.2 + 109381 0.68 0.933366
Target:  5'- --uUGCGCAACAaaauaguuCGACGCGCUGGGu -3'
miRNA:   3'- guuGCGCGUUGUac------GUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 100049 0.68 0.938591
Target:  5'- gCGGCGCGCGgcGCGUuCAGCAUGCUu-- -3'
miRNA:   3'- -GUUGCGCGU--UGUAcGUUGUGCGAcuu -5'
22864 3' -51 NC_005137.2 + 46450 0.68 0.942087
Target:  5'- gAACGCGcCGACGuguUGCAcagcaucauuauguACGCGUUGAAc -3'
miRNA:   3'- gUUGCGC-GUUGU---ACGU--------------UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 117593 0.68 0.943545
Target:  5'- uGACGgGCGACGUGU-ACGCuGUUGAu -3'
miRNA:   3'- gUUGCgCGUUGUACGuUGUG-CGACUu -5'
22864 3' -51 NC_005137.2 + 15095 0.68 0.950031
Target:  5'- aCAACGCGCAugGCAucguugauaaaauggUgGCAACACGCg--- -3'
miRNA:   3'- -GUUGCGCGU--UGU---------------A-CGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 90172 0.68 0.952222
Target:  5'- -cGCGUGCAACGcGUuacaauucucacaAACGCGCUGGu -3'
miRNA:   3'- guUGCGCGUUGUaCG-------------UUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 64550 0.68 0.952222
Target:  5'- cCAACGUGCGcACGUuaaGCGACACGUuuccuauUGAGa -3'
miRNA:   3'- -GUUGCGCGU-UGUA---CGUUGUGCG-------ACUU- -5'
22864 3' -51 NC_005137.2 + 16773 0.68 0.952652
Target:  5'- uGACG-GCAccGCGuuUGcCAACACGCUGGAu -3'
miRNA:   3'- gUUGCgCGU--UGU--AC-GUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 112778 0.68 0.952652
Target:  5'- aCGACGCGCAcACA-GCAACACcGCc--- -3'
miRNA:   3'- -GUUGCGCGU-UGUaCGUUGUG-CGacuu -5'
22864 3' -51 NC_005137.2 + 84539 0.68 0.952652
Target:  5'- uCAACGCGUAcauaaugauGCuGUGCAACACGUcGGc -3'
miRNA:   3'- -GUUGCGCGU---------UG-UACGUUGUGCGaCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.