miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 3' -51 NC_005137.2 + 26130 0.67 0.967776
Target:  5'- uCGACGgGUgcugAGCAuUGCAACGCGCaaaUGAAa -3'
miRNA:   3'- -GUUGCgCG----UUGU-ACGUUGUGCG---ACUU- -5'
22864 3' -51 NC_005137.2 + 130851 0.67 0.967776
Target:  5'- gAACGCGUugGACGcGCAGCccGCGcCUGAAu -3'
miRNA:   3'- gUUGCGCG--UUGUaCGUUG--UGC-GACUU- -5'
22864 3' -51 NC_005137.2 + 95888 0.67 0.964368
Target:  5'- -cACGgGCAugGUGCGuCGCGgUGAc -3'
miRNA:   3'- guUGCgCGUugUACGUuGUGCgACUu -5'
22864 3' -51 NC_005137.2 + 73302 0.67 0.964368
Target:  5'- -cACaCGCAGCAuuuuuUGCAGCGCGgaGAGc -3'
miRNA:   3'- guUGcGCGUUGU-----ACGUUGUGCgaCUU- -5'
22864 3' -51 NC_005137.2 + 2281 0.67 0.964368
Target:  5'- aAACGCGaacacucuaagGGCGUGCAcgacgGCACGUUGGAa -3'
miRNA:   3'- gUUGCGCg----------UUGUACGU-----UGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 9739 0.67 0.964368
Target:  5'- aUAACGUGCAccuGCAcuuguUGCcGCAUGUUGAGa -3'
miRNA:   3'- -GUUGCGCGU---UGU-----ACGuUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 49687 0.67 0.964368
Target:  5'- uGGCGCGCGGCG-GUAACuACGCg--- -3'
miRNA:   3'- gUUGCGCGUUGUaCGUUG-UGCGacuu -5'
22864 3' -51 NC_005137.2 + 45449 0.67 0.964368
Target:  5'- gUAGCGgGCGGC--GCAGCACGCg--- -3'
miRNA:   3'- -GUUGCgCGUUGuaCGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 99298 0.67 0.960716
Target:  5'- aCGACGCG-AACGUGC-ACACGUcGGu -3'
miRNA:   3'- -GUUGCGCgUUGUACGuUGUGCGaCUu -5'
22864 3' -51 NC_005137.2 + 66453 0.67 0.956812
Target:  5'- aAACGUGUcgcuuAACGUGCG-CACGUUGGu -3'
miRNA:   3'- gUUGCGCG-----UUGUACGUuGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 26546 0.67 0.956812
Target:  5'- -cACGUGCAACAaGuCGugGCGCUGc- -3'
miRNA:   3'- guUGCGCGUUGUaC-GUugUGCGACuu -5'
22864 3' -51 NC_005137.2 + 16773 0.68 0.952652
Target:  5'- uGACG-GCAccGCGuuUGcCAACACGCUGGAu -3'
miRNA:   3'- gUUGCgCGU--UGU--AC-GUUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 84539 0.68 0.952652
Target:  5'- uCAACGCGUAcauaaugauGCuGUGCAACACGUcGGc -3'
miRNA:   3'- -GUUGCGCGU---------UG-UACGUUGUGCGaCUu -5'
22864 3' -51 NC_005137.2 + 112778 0.68 0.952652
Target:  5'- aCGACGCGCAcACA-GCAACACcGCc--- -3'
miRNA:   3'- -GUUGCGCGU-UGUaCGUUGUG-CGacuu -5'
22864 3' -51 NC_005137.2 + 28047 0.68 0.952652
Target:  5'- aCGugGCGCGAC-----GCGCGCUGGGa -3'
miRNA:   3'- -GUugCGCGUUGuacguUGUGCGACUU- -5'
22864 3' -51 NC_005137.2 + 64550 0.68 0.952222
Target:  5'- cCAACGUGCGcACGUuaaGCGACACGUuuccuauUGAGa -3'
miRNA:   3'- -GUUGCGCGU-UGUA---CGUUGUGCG-------ACUU- -5'
22864 3' -51 NC_005137.2 + 90172 0.68 0.952222
Target:  5'- -cGCGUGCAACGcGUuacaauucucacaAACGCGCUGGu -3'
miRNA:   3'- guUGCGCGUUGUaCG-------------UUGUGCGACUu -5'
22864 3' -51 NC_005137.2 + 15095 0.68 0.950031
Target:  5'- aCAACGCGCAugGCAucguugauaaaauggUgGCAACACGCg--- -3'
miRNA:   3'- -GUUGCGCGU--UGU---------------A-CGUUGUGCGacuu -5'
22864 3' -51 NC_005137.2 + 117593 0.68 0.943545
Target:  5'- uGACGgGCGACGUGU-ACGCuGUUGAu -3'
miRNA:   3'- gUUGCgCGUUGUACGuUGUG-CGACUu -5'
22864 3' -51 NC_005137.2 + 46450 0.68 0.942087
Target:  5'- gAACGCGcCGACGuguUGCAcagcaucauuauguACGCGUUGAAc -3'
miRNA:   3'- gUUGCGC-GUUGU---ACGU--------------UGUGCGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.