Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22864 | 3' | -51 | NC_005137.2 | + | 100049 | 0.68 | 0.938591 |
Target: 5'- gCGGCGCGCGgcGCGUuCAGCAUGCUu-- -3' miRNA: 3'- -GUUGCGCGU--UGUAcGUUGUGCGAcuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 105081 | 0.68 | 0.933366 |
Target: 5'- --uCGCGCAACAUGCAAUG-GCUa-- -3' miRNA: 3'- guuGCGCGUUGUACGUUGUgCGAcuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 109381 | 0.68 | 0.933366 |
Target: 5'- --uUGCGCAACAaaauaguuCGACGCGCUGGGu -3' miRNA: 3'- guuGCGCGUUGUac------GUUGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 110829 | 0.68 | 0.933366 |
Target: 5'- cCGACGCGCAAgA-GUcguGCGCGCUGu- -3' miRNA: 3'- -GUUGCGCGUUgUaCGu--UGUGCGACuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 3439 | 0.69 | 0.927869 |
Target: 5'- --uCGCGCAGCAUuuGGCGCGCUu-- -3' miRNA: 3'- guuGCGCGUUGUAcgUUGUGCGAcuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 32987 | 0.69 | 0.927869 |
Target: 5'- gCAGCGCcCGACGUGC---ACGCUGGc -3' miRNA: 3'- -GUUGCGcGUUGUACGuugUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 57353 | 0.69 | 0.9221 |
Target: 5'- uUAGCGCGCGAUucg-GACACGUUGAc -3' miRNA: 3'- -GUUGCGCGUUGuacgUUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 67370 | 0.69 | 0.9221 |
Target: 5'- gCGAUGCGCGACcgucgccGCGGCgGCGUUGAAu -3' miRNA: 3'- -GUUGCGCGUUGua-----CGUUG-UGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 99619 | 0.69 | 0.903164 |
Target: 5'- uGACGCGCAACGUGCAAaucaACuCgGAc -3' miRNA: 3'- gUUGCGCGUUGUACGUUg---UGcGaCUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 24002 | 0.69 | 0.903164 |
Target: 5'- --cUGCGCAGCGUuugcGCAAcCACGUUGAu -3' miRNA: 3'- guuGCGCGUUGUA----CGUU-GUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 66858 | 0.7 | 0.896316 |
Target: 5'- aAACGCGCAGgGUGCGcuucCACGCa--- -3' miRNA: 3'- gUUGCGCGUUgUACGUu---GUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 35239 | 0.7 | 0.896316 |
Target: 5'- aAACGuCcCGACGUGCGACGCccGCUGAu -3' miRNA: 3'- gUUGC-GcGUUGUACGUUGUG--CGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 73411 | 0.7 | 0.889206 |
Target: 5'- aAACGCuGCugcuaucuGCuUGCGGCGCGCUGGg -3' miRNA: 3'- gUUGCG-CGu-------UGuACGUUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 11264 | 0.7 | 0.881838 |
Target: 5'- cCAGCgGCGCuGACGUccGCuACGCGCUGAc -3' miRNA: 3'- -GUUG-CGCG-UUGUA--CGuUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 129002 | 0.7 | 0.874217 |
Target: 5'- -uGCGcCGCAGCGUGCAcgagcuguGCACGCg--- -3' miRNA: 3'- guUGC-GCGUUGUACGU--------UGUGCGacuu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 31450 | 0.7 | 0.866349 |
Target: 5'- gGACGUGUcggAACAaGCgAGCGCGCUGAc -3' miRNA: 3'- gUUGCGCG---UUGUaCG-UUGUGCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 26669 | 0.7 | 0.858241 |
Target: 5'- aCGACGaCGCAcgcACGUGCgaacguuugAugGCGCUGAAc -3' miRNA: 3'- -GUUGC-GCGU---UGUACG---------UugUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 30939 | 0.71 | 0.8499 |
Target: 5'- -cGCGCGCcGCG-GCAcaaaGCAUGCUGAAc -3' miRNA: 3'- guUGCGCGuUGUaCGU----UGUGCGACUU- -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 2485 | 0.71 | 0.82356 |
Target: 5'- -uAUGCGCcGCGUGCGGCAuggUGCUGGu -3' miRNA: 3'- guUGCGCGuUGUACGUUGU---GCGACUu -5' |
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22864 | 3' | -51 | NC_005137.2 | + | 12212 | 0.71 | 0.814371 |
Target: 5'- -cACGCGC-GCAUGUAACGCuucaucGCUGGAu -3' miRNA: 3'- guUGCGCGuUGUACGUUGUG------CGACUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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