miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 51701 0.7 0.892628
Target:  5'- cGGCaccguuGCGCGCGuCGGaAGCGCAUg -3'
miRNA:   3'- -CCGcauuu-UGCGCGU-GUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 39815 0.68 0.943565
Target:  5'- cGCGUGcaaccAAACGcCGCGCcacggaagaaagcgAGUuuAGCGCACg -3'
miRNA:   3'- cCGCAU-----UUUGC-GCGUG--------------UCA--UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 93676 0.68 0.940195
Target:  5'- cGCGU-AGAUGCGCaACAGgcccAGCGC-Cg -3'
miRNA:   3'- cCGCAuUUUGCGCG-UGUCa---UCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 39286 0.68 0.940195
Target:  5'- uGGCGUAcacguCGCGCGCAaaaAGUGCGu -3'
miRNA:   3'- -CCGCAUuuu--GCGCGUGUca-UCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 93447 0.69 0.937206
Target:  5'- uGCGUucggggaugcauACGgGCACGGU-GCGCGCc -3'
miRNA:   3'- cCGCAuuu---------UGCgCGUGUCAuCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 122427 0.69 0.930946
Target:  5'- cGCGgguuuugcuGCaGCGCGCGGUcuacuccgucggccgAGCGCACa -3'
miRNA:   3'- cCGCauuu-----UG-CGCGUGUCA---------------UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 107983 0.69 0.929866
Target:  5'- cGCGuUGAcGCGCGCGCAGcuugaucaaUGGCGUg- -3'
miRNA:   3'- cCGC-AUUuUGCGCGUGUC---------AUCGCGug -5'
22864 5' -51.4 NC_005137.2 + 28782 0.69 0.918491
Target:  5'- uGUGUAaacGAACGCGCcCuc-GGCGCACa -3'
miRNA:   3'- cCGCAU---UUUGCGCGuGucaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 110432 0.69 0.918491
Target:  5'- gGGCGcgacgguGAGCGUGCACAccgcggccGgcGCGUACa -3'
miRNA:   3'- -CCGCau-----UUUGCGCGUGU--------CauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 108151 0.69 0.912412
Target:  5'- gGGCGgc-GGCG-GCGuCGGUAuGCGCGCg -3'
miRNA:   3'- -CCGCauuUUGCgCGU-GUCAU-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 75966 0.7 0.906073
Target:  5'- -uCGUGAcGCgGCGCGCGuUGGUGCACg -3'
miRNA:   3'- ccGCAUUuUG-CGCGUGUcAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 97474 0.7 0.892628
Target:  5'- cGGCGUGAcGCuCGCGCAGgug-GCACg -3'
miRNA:   3'- -CCGCAUUuUGcGCGUGUCaucgCGUG- -5'
22864 5' -51.4 NC_005137.2 + 84559 0.66 0.979346
Target:  5'- cGGCGUGc-AUGUGcCACAGcauGUGCGCc -3'
miRNA:   3'- -CCGCAUuuUGCGC-GUGUCau-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 119734 0.66 0.979346
Target:  5'- uGCGUc-AGCGCGUAgCGGacgucAGCGCGCu -3'
miRNA:   3'- cCGCAuuUUGCGCGU-GUCa----UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 122468 0.66 0.981583
Target:  5'- aGCGUuuuGACGgGCGuagguuuGUAGCGCAUc -3'
miRNA:   3'- cCGCAuu-UUGCgCGUgu-----CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 128818 0.66 0.982425
Target:  5'- uGCGUA--ACGCGCAaacuaaacuugauGaAGCGCGCg -3'
miRNA:   3'- cCGCAUuuUGCGCGUgu-----------CaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 776 0.66 0.983633
Target:  5'- uGGCGgcgGAGGCGgugGCAUaacauuaaguGGUGGCGCuACa -3'
miRNA:   3'- -CCGCa--UUUUGCg--CGUG----------UCAUCGCG-UG- -5'
22864 5' -51.4 NC_005137.2 + 111416 0.66 0.983633
Target:  5'- cGGCGUAcAGCuuguCGCGCAGUu-CGCAa -3'
miRNA:   3'- -CCGCAUuUUGc---GCGUGUCAucGCGUg -5'
22864 5' -51.4 NC_005137.2 + 24304 0.66 0.983633
Target:  5'- cGGCGUuu-GCG-GCuGCGGUGGUggcggGCACg -3'
miRNA:   3'- -CCGCAuuuUGCgCG-UGUCAUCG-----CGUG- -5'
22864 5' -51.4 NC_005137.2 + 106438 1.14 0.003185
Target:  5'- cGGCGUAAAACGCGCACAGUAGCGCACa -3'
miRNA:   3'- -CCGCAUUUUGCGCGUGUCAUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.