miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 61489 0.71 0.862778
Target:  5'- cGCG---GACGCGgACAGUGGUGC-Ca -3'
miRNA:   3'- cCGCauuUUGCGCgUGUCAUCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 61691 0.67 0.974278
Target:  5'- aGCGUG--GCGCGUuuuaaaAGUAGUGuCACa -3'
miRNA:   3'- cCGCAUuuUGCGCGug----UCAUCGC-GUG- -5'
22864 5' -51.4 NC_005137.2 + 64132 0.71 0.862778
Target:  5'- cGCGUGcuuauGACGUGCGUGGaAGCGCACc -3'
miRNA:   3'- cCGCAUu----UUGCGCGUGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 66848 0.72 0.79268
Target:  5'- cGGCGccguuAAACGCGCAgGGU-GCGCu- -3'
miRNA:   3'- -CCGCau---UUUGCGCGUgUCAuCGCGug -5'
22864 5' -51.4 NC_005137.2 + 67054 0.67 0.968361
Target:  5'- cGGCGUcAAACGUGUAauuauCGGgacauucGCGCACc -3'
miRNA:   3'- -CCGCAuUUUGCGCGU-----GUCau-----CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 67548 0.67 0.965065
Target:  5'- aGGCGgcacAAACGCGCGCcg-AGCGggaACa -3'
miRNA:   3'- -CCGCau--UUUGCGCGUGucaUCGCg--UG- -5'
22864 5' -51.4 NC_005137.2 + 68396 0.66 0.979346
Target:  5'- cGCGUcgGcCGaGCACAucgacuuguacGUGGCGCACg -3'
miRNA:   3'- cCGCAuuUuGCgCGUGU-----------CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 69143 0.73 0.753532
Target:  5'- aGCGU---ACGCGCaaaaauuuuauaACGGUGGCGCAg -3'
miRNA:   3'- cCGCAuuuUGCGCG------------UGUCAUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 69256 0.66 0.979346
Target:  5'- gGGCuaUGAAacuggacgGCGUGCGCGGUcgcGGCGCGu -3'
miRNA:   3'- -CCGc-AUUU--------UGCGCGUGUCA---UCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 70041 0.74 0.722904
Target:  5'- cGCGUAcgugguGCGCcccgaacuucuGCACAGUGGcCGCACa -3'
miRNA:   3'- cCGCAUuu----UGCG-----------CGUGUCAUC-GCGUG- -5'
22864 5' -51.4 NC_005137.2 + 71373 0.73 0.753532
Target:  5'- cGGCGUGc--CGuUGCAaaaAGUGGCGCGCu -3'
miRNA:   3'- -CCGCAUuuuGC-GCGUg--UCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 72376 0.66 0.981583
Target:  5'- aGUGUAc-ACGCGCAauuCGGcGGCGCAa -3'
miRNA:   3'- cCGCAUuuUGCGCGU---GUCaUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 74450 0.67 0.968361
Target:  5'- gGGCGUuuGAAUGUgcccgGCAUGGUGGUGCcCa -3'
miRNA:   3'- -CCGCAu-UUUGCG-----CGUGUCAUCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 74864 0.66 0.985505
Target:  5'- cGCcucUAAAACaGUGC-CAGUGGuCGCACa -3'
miRNA:   3'- cCGc--AUUUUG-CGCGuGUCAUC-GCGUG- -5'
22864 5' -51.4 NC_005137.2 + 75583 0.67 0.961536
Target:  5'- uGGCG---GACGCGgGCGGcgccGUGCGCg -3'
miRNA:   3'- -CCGCauuUUGCGCgUGUCau--CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 75966 0.7 0.906073
Target:  5'- -uCGUGAcGCgGCGCGCGuUGGUGCACg -3'
miRNA:   3'- ccGCAUUuUG-CGCGUGUcAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 76196 0.71 0.860387
Target:  5'- uGCGUuuuuGGugGCGCuuuuuauguacguuGCGGUAGCGCuGCg -3'
miRNA:   3'- cCGCAu---UUugCGCG--------------UGUCAUCGCG-UG- -5'
22864 5' -51.4 NC_005137.2 + 77091 0.71 0.837982
Target:  5'- gGGCauuucuuGACGCGCACguAGUAGuCGUACg -3'
miRNA:   3'- -CCGcauu---UUGCGCGUG--UCAUC-GCGUG- -5'
22864 5' -51.4 NC_005137.2 + 77647 0.66 0.976914
Target:  5'- uGUGuUGAAGCaCGCACAcGUGGCcaaGCACg -3'
miRNA:   3'- cCGC-AUUUUGcGCGUGU-CAUCG---CGUG- -5'
22864 5' -51.4 NC_005137.2 + 78557 0.7 0.906073
Target:  5'- uGCGgcGGAgGCGCuugaaACGGaAGCGCGCc -3'
miRNA:   3'- cCGCauUUUgCGCG-----UGUCaUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.