miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 28782 0.69 0.918491
Target:  5'- uGUGUAaacGAACGCGCcCuc-GGCGCACa -3'
miRNA:   3'- cCGCAU---UUUGCGCGuGucaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 30737 0.7 0.904774
Target:  5'- gGGCGUGAaugccgcGACGCGCGCccGUgcguugcGGCGCcCg -3'
miRNA:   3'- -CCGCAUU-------UUGCGCGUGu-CA-------UCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 31016 0.78 0.501611
Target:  5'- uGGCGguugguGCGUGCGCuGcUGGCGCACg -3'
miRNA:   3'- -CCGCauuu--UGCGCGUGuC-AUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 34588 0.7 0.899477
Target:  5'- cGCGgcGGGCGCGuCGCcgcgcgGGUAGCGguCg -3'
miRNA:   3'- cCGCauUUUGCGC-GUG------UCAUCGCguG- -5'
22864 5' -51.4 NC_005137.2 + 34867 0.68 0.94497
Target:  5'- cGGCGggcAACGCgauGCGCAugGGCGUACc -3'
miRNA:   3'- -CCGCauuUUGCG---CGUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 35407 0.67 0.971429
Target:  5'- aGCacgu--CGCGCACAGUGcGCGgGCg -3'
miRNA:   3'- cCGcauuuuGCGCGUGUCAU-CGCgUG- -5'
22864 5' -51.4 NC_005137.2 + 35814 0.67 0.974278
Target:  5'- cGCGUugcAAucUGCGUGC-GUAGUGCACg -3'
miRNA:   3'- cCGCA---UUuuGCGCGUGuCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 38340 0.81 0.337903
Target:  5'- gGGCGUAAgcAGCGCGUugACAGUGGCGUu- -3'
miRNA:   3'- -CCGCAUU--UUGCGCG--UGUCAUCGCGug -5'
22864 5' -51.4 NC_005137.2 + 39286 0.68 0.940195
Target:  5'- uGGCGUAcacguCGCGCGCAaaaAGUGCGu -3'
miRNA:   3'- -CCGCAUuuu--GCGCGUGUca-UCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 39815 0.68 0.943565
Target:  5'- cGCGUGcaaccAAACGcCGCGCcacggaagaaagcgAGUuuAGCGCACg -3'
miRNA:   3'- cCGCAU-----UUUGC-GCGUG--------------UCA--UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 48316 0.66 0.978876
Target:  5'- uGCGcagcugguCGCGCACGGccuUGGCgGCACg -3'
miRNA:   3'- cCGCauuuu---GCGCGUGUC---AUCG-CGUG- -5'
22864 5' -51.4 NC_005137.2 + 51077 0.67 0.974278
Target:  5'- aGCGUGAucGACGUGCACA-UA-CGCAUu -3'
miRNA:   3'- cCGCAUU--UUGCGCGUGUcAUcGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 51423 0.66 0.976914
Target:  5'- uGCG----ACGCuaucGCACGGcGGCGCGCa -3'
miRNA:   3'- cCGCauuuUGCG----CGUGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 51701 0.7 0.892628
Target:  5'- cGGCaccguuGCGCGCGuCGGaAGCGCAUg -3'
miRNA:   3'- -CCGcauuu-UGCGCGU-GUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 53611 0.67 0.965065
Target:  5'- cGGCaGUAAGGa--GCAU-GUGGCGCACu -3'
miRNA:   3'- -CCG-CAUUUUgcgCGUGuCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 56515 0.66 0.981151
Target:  5'- cGGCGUuacguuggccgcAAACGCGCcguacaaacgcACGGU-GCGCAa -3'
miRNA:   3'- -CCGCAu-----------UUUGCGCG-----------UGUCAuCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 57567 0.68 0.953752
Target:  5'- cGCGUuuAGAACGCGUcgAGcccAGCGCGCc -3'
miRNA:   3'- cCGCA--UUUUGCGCGugUCa--UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 58671 0.72 0.819515
Target:  5'- cGGCGcAGcuCGCGCaauucgcguucggACAGUGGCGcCGCg -3'
miRNA:   3'- -CCGCaUUuuGCGCG-------------UGUCAUCGC-GUG- -5'
22864 5' -51.4 NC_005137.2 + 59760 0.66 0.977911
Target:  5'- gGGCGUAGAAguguuuuuagagauuUGCaaCACGGUGggguuGCGCGCg -3'
miRNA:   3'- -CCGCAUUUU---------------GCGc-GUGUCAU-----CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 61102 0.66 0.983828
Target:  5'- cGCGUAaaAAACGCGCACcaacgccgcguucguGuUGGUGCAa -3'
miRNA:   3'- cCGCAU--UUUGCGCGUGu--------------C-AUCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.