miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 106656 0.71 0.846463
Target:  5'- cGGUgGUGAAACGCGaCGCAaacGGCGUGCa -3'
miRNA:   3'- -CCG-CAUUUUGCGC-GUGUca-UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 26505 0.71 0.85473
Target:  5'- cGCGUuuGACGCgGCcgaugacuuaaaAguGUGGCGCGCg -3'
miRNA:   3'- cCGCAuuUUGCG-CG------------UguCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 13554 0.71 0.85473
Target:  5'- cGCGUAAAACGCGUuCAGcguaccgguUAGCuGCAUc -3'
miRNA:   3'- cCGCAUUUUGCGCGuGUC---------AUCG-CGUG- -5'
22864 5' -51.4 NC_005137.2 + 76196 0.71 0.860387
Target:  5'- uGCGUuuuuGGugGCGCuuuuuauguacguuGCGGUAGCGCuGCg -3'
miRNA:   3'- cCGCAu---UUugCGCG--------------UGUCAUCGCG-UG- -5'
22864 5' -51.4 NC_005137.2 + 61489 0.71 0.862778
Target:  5'- cGCG---GACGCGgACAGUGGUGC-Ca -3'
miRNA:   3'- cCGCauuUUGCGCgUGUCAUCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 64132 0.71 0.862778
Target:  5'- cGCGUGcuuauGACGUGCGUGGaAGCGCACc -3'
miRNA:   3'- cCGCAUu----UUGCGCGUGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 79151 0.71 0.868276
Target:  5'- gGGCGUAAAagGCGUGCACAuggacaagaccaacGUgaucaaguuuaAGCGCAa -3'
miRNA:   3'- -CCGCAUUU--UGCGCGUGU--------------CA-----------UCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 1988 0.71 0.870597
Target:  5'- cGGuCGUugccGCGUGCACAGcucGUGCACg -3'
miRNA:   3'- -CC-GCAuuu-UGCGCGUGUCau-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 26297 0.71 0.870597
Target:  5'- aGCGU---ACGCGUacaACGGcGGCGCGCu -3'
miRNA:   3'- cCGCAuuuUGCGCG---UGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 93237 0.7 0.878183
Target:  5'- cGGUGcaugauUGAAACGCGCACAaacGGCGCu- -3'
miRNA:   3'- -CCGC------AUUUUGCGCGUGUca-UCGCGug -5'
22864 5' -51.4 NC_005137.2 + 81704 0.7 0.878183
Target:  5'- aGCGUAAAACa---ACGGUAGCGUGCg -3'
miRNA:   3'- cCGCAUUUUGcgcgUGUCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 123923 0.7 0.878183
Target:  5'- -aCGUAAAuuACGUGCACAcgAGCGUGCg -3'
miRNA:   3'- ccGCAUUU--UGCGCGUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 118099 0.7 0.885528
Target:  5'- ---aUGAGACGCGUGCGGUGcaacaagguGCGCACc -3'
miRNA:   3'- ccgcAUUUUGCGCGUGUCAU---------CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 125518 0.7 0.892628
Target:  5'- cGCGUAAucagcucuGCGgGCACGGUGccGCGUAUu -3'
miRNA:   3'- cCGCAUUu-------UGCgCGUGUCAU--CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 97474 0.7 0.892628
Target:  5'- cGGCGUGAcGCuCGCGCAGgug-GCACg -3'
miRNA:   3'- -CCGCAUUuUGcGCGUGUCaucgCGUG- -5'
22864 5' -51.4 NC_005137.2 + 51701 0.7 0.892628
Target:  5'- cGGCaccguuGCGCGCGuCGGaAGCGCAUg -3'
miRNA:   3'- -CCGcauuu-UGCGCGU-GUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 10975 0.7 0.899477
Target:  5'- cGCGUGAAuaGCGCGCGacuUGGCGUAg -3'
miRNA:   3'- cCGCAUUU--UGCGCGUgucAUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 34588 0.7 0.899477
Target:  5'- cGCGgcGGGCGCGuCGCcgcgcgGGUAGCGguCg -3'
miRNA:   3'- cCGCauUUUGCGC-GUG------UCAUCGCguG- -5'
22864 5' -51.4 NC_005137.2 + 30737 0.7 0.904774
Target:  5'- gGGCGUGAaugccgcGACGCGCGCccGUgcguugcGGCGCcCg -3'
miRNA:   3'- -CCGCAUU-------UUGCGCGUGu-CA-------UCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 11303 0.7 0.906073
Target:  5'- cGGCGg--GAUGCGUACGugcuaagcuGUGuGCGCGCg -3'
miRNA:   3'- -CCGCauuUUGCGCGUGU---------CAU-CGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.