miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 48316 0.66 0.978876
Target:  5'- uGCGcagcugguCGCGCACGGccuUGGCgGCACg -3'
miRNA:   3'- cCGCauuuu---GCGCGUGUC---AUCG-CGUG- -5'
22864 5' -51.4 NC_005137.2 + 59760 0.66 0.977911
Target:  5'- gGGCGUAGAAguguuuuuagagauuUGCaaCACGGUGggguuGCGCGCg -3'
miRNA:   3'- -CCGCAUUUU---------------GCGc-GUGUCAU-----CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 8623 0.66 0.976914
Target:  5'- gGGCGcUAAGGCgGCGgGCGugGGCGUGCu -3'
miRNA:   3'- -CCGC-AUUUUG-CGCgUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 51423 0.66 0.976914
Target:  5'- uGCG----ACGCuaucGCACGGcGGCGCGCa -3'
miRNA:   3'- cCGCauuuUGCG----CGUGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 77647 0.66 0.976914
Target:  5'- uGUGuUGAAGCaCGCACAcGUGGCcaaGCACg -3'
miRNA:   3'- cCGC-AUUUUGcGCGUGU-CAUCG---CGUG- -5'
22864 5' -51.4 NC_005137.2 + 61691 0.67 0.974278
Target:  5'- aGCGUG--GCGCGUuuuaaaAGUAGUGuCACa -3'
miRNA:   3'- cCGCAUuuUGCGCGug----UCAUCGC-GUG- -5'
22864 5' -51.4 NC_005137.2 + 129522 0.67 0.974278
Target:  5'- ----cGAAACGUGCugGcgagcauuGUGGCGCGCa -3'
miRNA:   3'- ccgcaUUUUGCGCGugU--------CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 110651 0.67 0.974278
Target:  5'- cGGCGUuuGGCuuGUGCccgugACGGgcGUGCGCg -3'
miRNA:   3'- -CCGCAuuUUG--CGCG-----UGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 51077 0.67 0.974278
Target:  5'- aGCGUGAucGACGUGCACA-UA-CGCAUu -3'
miRNA:   3'- cCGCAUU--UUGCGCGUGUcAUcGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 35814 0.67 0.974278
Target:  5'- cGCGUugcAAucUGCGUGC-GUAGUGCACg -3'
miRNA:   3'- cCGCA---UUuuGCGCGUGuCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 35407 0.67 0.971429
Target:  5'- aGCacgu--CGCGCACAGUGcGCGgGCg -3'
miRNA:   3'- cCGcauuuuGCGCGUGUCAU-CGCgUG- -5'
22864 5' -51.4 NC_005137.2 + 67054 0.67 0.968361
Target:  5'- cGGCGUcAAACGUGUAauuauCGGgacauucGCGCACc -3'
miRNA:   3'- -CCGCAuUUUGCGCGU-----GUCau-----CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 74450 0.67 0.968361
Target:  5'- gGGCGUuuGAAUGUgcccgGCAUGGUGGUGCcCa -3'
miRNA:   3'- -CCGCAu-UUUGCG-----CGUGUCAUCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 116841 0.67 0.965065
Target:  5'- uGUGUuugAGGACGCGUacguggauuggaGCGGUGuGCGCAUg -3'
miRNA:   3'- cCGCA---UUUUGCGCG------------UGUCAU-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 110723 0.67 0.965065
Target:  5'- cGGUGU---GCGCGCAgAGcgcuuGUGCGCc -3'
miRNA:   3'- -CCGCAuuuUGCGCGUgUCau---CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 81595 0.67 0.965065
Target:  5'- cGCGU--GACGCGgcaGCAGUAagcagggucGUGCACa -3'
miRNA:   3'- cCGCAuuUUGCGCg--UGUCAU---------CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 67548 0.67 0.965065
Target:  5'- aGGCGgcacAAACGCGCGCcg-AGCGggaACa -3'
miRNA:   3'- -CCGCau--UUUGCGCGUGucaUCGCg--UG- -5'
22864 5' -51.4 NC_005137.2 + 53611 0.67 0.965065
Target:  5'- cGGCaGUAAGGa--GCAU-GUGGCGCACu -3'
miRNA:   3'- -CCG-CAUUUUgcgCGUGuCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 102933 0.67 0.961536
Target:  5'- cGCGcu--GCGUGUACAGccgucUGGCGCAUc -3'
miRNA:   3'- cCGCauuuUGCGCGUGUC-----AUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 99974 0.67 0.961536
Target:  5'- cGCGccucuuCGUGCGcCAGcAGCGCACg -3'
miRNA:   3'- cCGCauuuu-GCGCGU-GUCaUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.