Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22864 | 5' | -51.4 | NC_005137.2 | + | 75583 | 0.67 | 0.961536 |
Target: 5'- uGGCG---GACGCGgGCGGcgccGUGCGCg -3' miRNA: 3'- -CCGCauuUUGCGCgUGUCau--CGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 84283 | 0.68 | 0.957767 |
Target: 5'- uGGUGgu-GGCGCGCguggaaACGGUGucgauguccguuGCGCGCg -3' miRNA: 3'- -CCGCauuUUGCGCG------UGUCAU------------CGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 20432 | 0.68 | 0.957767 |
Target: 5'- aGGau--GGGCGCGCcaagacGCAGgugcgGGCGCACa -3' miRNA: 3'- -CCgcauUUUGCGCG------UGUCa----UCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 57567 | 0.68 | 0.953752 |
Target: 5'- cGCGUuuAGAACGCGUcgAGcccAGCGCGCc -3' miRNA: 3'- cCGCA--UUUUGCGCGugUCa--UCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 97996 | 0.68 | 0.953752 |
Target: 5'- cGGCGUGGGuGCGCcCGCcaAGUGGCcagcguGCACg -3' miRNA: 3'- -CCGCAUUU-UGCGcGUG--UCAUCG------CGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 14133 | 0.68 | 0.953752 |
Target: 5'- cGCGg--GGCaGCGCACAu--GCGCACa -3' miRNA: 3'- cCGCauuUUG-CGCGUGUcauCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 28050 | 0.68 | 0.94497 |
Target: 5'- uGGCGcGAcGCGCGCugGGauGCGC-Ca -3' miRNA: 3'- -CCGCaUUuUGCGCGugUCauCGCGuG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 34867 | 0.68 | 0.94497 |
Target: 5'- cGGCGggcAACGCgauGCGCAugGGCGUACc -3' miRNA: 3'- -CCGCauuUUGCG---CGUGUcaUCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 94561 | 0.68 | 0.94497 |
Target: 5'- uGGCGaUAAAACGCGUAUA-UAaCGCAUg -3' miRNA: 3'- -CCGC-AUUUUGCGCGUGUcAUcGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 39815 | 0.68 | 0.943565 |
Target: 5'- cGCGUGcaaccAAACGcCGCGCcacggaagaaagcgAGUuuAGCGCACg -3' miRNA: 3'- cCGCAU-----UUUGC-GCGUG--------------UCA--UCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 39286 | 0.68 | 0.940195 |
Target: 5'- uGGCGUAcacguCGCGCGCAaaaAGUGCGu -3' miRNA: 3'- -CCGCAUuuu--GCGCGUGUca-UCGCGUg -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 93676 | 0.68 | 0.940195 |
Target: 5'- cGCGU-AGAUGCGCaACAGgcccAGCGC-Cg -3' miRNA: 3'- cCGCAuUUUGCGCG-UGUCa---UCGCGuG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 112518 | 0.68 | 0.940195 |
Target: 5'- gGGCuUAAacuuGACGUcgGCACAGccGCGCACu -3' miRNA: 3'- -CCGcAUU----UUGCG--CGUGUCauCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 98438 | 0.68 | 0.940195 |
Target: 5'- uGGCGguUAAAGCGCaaGCAGccGCGUGCa -3' miRNA: 3'- -CCGC--AUUUUGCGcgUGUCauCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 93447 | 0.69 | 0.937206 |
Target: 5'- uGCGUucggggaugcauACGgGCACGGU-GCGCGCc -3' miRNA: 3'- cCGCAuuu---------UGCgCGUGUCAuCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 23663 | 0.69 | 0.935161 |
Target: 5'- uGGCG--AGGCGCGCAC-GUucaGGCGCc- -3' miRNA: 3'- -CCGCauUUUGCGCGUGuCA---UCGCGug -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 93407 | 0.69 | 0.935161 |
Target: 5'- gGGCGUAAAA-GUGUGCAGc-GUGUACg -3' miRNA: 3'- -CCGCAUUUUgCGCGUGUCauCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 122427 | 0.69 | 0.930946 |
Target: 5'- cGCGgguuuugcuGCaGCGCGCGGUcuacuccgucggccgAGCGCACa -3' miRNA: 3'- cCGCauuu-----UG-CGCGUGUCA---------------UCGCGUG- -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 107983 | 0.69 | 0.929866 |
Target: 5'- cGCGuUGAcGCGCGCGCAGcuugaucaaUGGCGUg- -3' miRNA: 3'- cCGC-AUUuUGCGCGUGUC---------AUCGCGug -5' |
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22864 | 5' | -51.4 | NC_005137.2 | + | 110432 | 0.69 | 0.918491 |
Target: 5'- gGGCGcgacgguGAGCGUGCACAccgcggccGgcGCGUACa -3' miRNA: 3'- -CCGCau-----UUUGCGCGUGU--------CauCGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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