miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 102933 0.67 0.961536
Target:  5'- cGCGcu--GCGUGUACAGccgucUGGCGCAUc -3'
miRNA:   3'- cCGCauuuUGCGCGUGUC-----AUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 20432 0.68 0.957767
Target:  5'- aGGau--GGGCGCGCcaagacGCAGgugcgGGCGCACa -3'
miRNA:   3'- -CCgcauUUUGCGCG------UGUCa----UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 84283 0.68 0.957767
Target:  5'- uGGUGgu-GGCGCGCguggaaACGGUGucgauguccguuGCGCGCg -3'
miRNA:   3'- -CCGCauuUUGCGCG------UGUCAU------------CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 14133 0.68 0.953752
Target:  5'- cGCGg--GGCaGCGCACAu--GCGCACa -3'
miRNA:   3'- cCGCauuUUG-CGCGUGUcauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 57567 0.68 0.953752
Target:  5'- cGCGUuuAGAACGCGUcgAGcccAGCGCGCc -3'
miRNA:   3'- cCGCA--UUUUGCGCGugUCa--UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 97996 0.68 0.953752
Target:  5'- cGGCGUGGGuGCGCcCGCcaAGUGGCcagcguGCACg -3'
miRNA:   3'- -CCGCAUUU-UGCGcGUG--UCAUCG------CGUG- -5'
22864 5' -51.4 NC_005137.2 + 94561 0.68 0.94497
Target:  5'- uGGCGaUAAAACGCGUAUA-UAaCGCAUg -3'
miRNA:   3'- -CCGC-AUUUUGCGCGUGUcAUcGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 28050 0.68 0.94497
Target:  5'- uGGCGcGAcGCGCGCugGGauGCGC-Ca -3'
miRNA:   3'- -CCGCaUUuUGCGCGugUCauCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 34867 0.68 0.94497
Target:  5'- cGGCGggcAACGCgauGCGCAugGGCGUACc -3'
miRNA:   3'- -CCGCauuUUGCG---CGUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 39815 0.68 0.943565
Target:  5'- cGCGUGcaaccAAACGcCGCGCcacggaagaaagcgAGUuuAGCGCACg -3'
miRNA:   3'- cCGCAU-----UUUGC-GCGUG--------------UCA--UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 112518 0.68 0.940195
Target:  5'- gGGCuUAAacuuGACGUcgGCACAGccGCGCACu -3'
miRNA:   3'- -CCGcAUU----UUGCG--CGUGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 93676 0.68 0.940195
Target:  5'- cGCGU-AGAUGCGCaACAGgcccAGCGC-Cg -3'
miRNA:   3'- cCGCAuUUUGCGCG-UGUCa---UCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 39286 0.68 0.940195
Target:  5'- uGGCGUAcacguCGCGCGCAaaaAGUGCGu -3'
miRNA:   3'- -CCGCAUuuu--GCGCGUGUca-UCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 98438 0.68 0.940195
Target:  5'- uGGCGguUAAAGCGCaaGCAGccGCGUGCa -3'
miRNA:   3'- -CCGC--AUUUUGCGcgUGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 93447 0.69 0.937206
Target:  5'- uGCGUucggggaugcauACGgGCACGGU-GCGCGCc -3'
miRNA:   3'- cCGCAuuu---------UGCgCGUGUCAuCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 23663 0.69 0.935161
Target:  5'- uGGCG--AGGCGCGCAC-GUucaGGCGCc- -3'
miRNA:   3'- -CCGCauUUUGCGCGUGuCA---UCGCGug -5'
22864 5' -51.4 NC_005137.2 + 93407 0.69 0.935161
Target:  5'- gGGCGUAAAA-GUGUGCAGc-GUGUACg -3'
miRNA:   3'- -CCGCAUUUUgCGCGUGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 122427 0.69 0.930946
Target:  5'- cGCGgguuuugcuGCaGCGCGCGGUcuacuccgucggccgAGCGCACa -3'
miRNA:   3'- cCGCauuu-----UG-CGCGUGUCA---------------UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 107983 0.69 0.929866
Target:  5'- cGCGuUGAcGCGCGCGCAGcuugaucaaUGGCGUg- -3'
miRNA:   3'- cCGC-AUUuUGCGCGUGUC---------AUCGCGug -5'
22864 5' -51.4 NC_005137.2 + 28782 0.69 0.918491
Target:  5'- uGUGUAaacGAACGCGCcCuc-GGCGCACa -3'
miRNA:   3'- cCGCAU---UUUGCGCGuGucaUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.