miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 776 0.66 0.983633
Target:  5'- uGGCGgcgGAGGCGgugGCAUaacauuaaguGGUGGCGCuACa -3'
miRNA:   3'- -CCGCa--UUUUGCg--CGUG----------UCAUCGCG-UG- -5'
22864 5' -51.4 NC_005137.2 + 1988 0.71 0.870597
Target:  5'- cGGuCGUugccGCGUGCACAGcucGUGCACg -3'
miRNA:   3'- -CC-GCAuuu-UGCGCGUGUCau-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 7000 0.72 0.79268
Target:  5'- aGCGgucgcCGgGCACAacGUGGCGCACg -3'
miRNA:   3'- cCGCauuuuGCgCGUGU--CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 7873 0.72 0.819515
Target:  5'- aGCGUGccgucacguaggaAAACGUGCACAccGGCGCAg -3'
miRNA:   3'- cCGCAU-------------UUUGCGCGUGUcaUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 8623 0.66 0.976914
Target:  5'- gGGCGcUAAGGCgGCGgGCGugGGCGUGCu -3'
miRNA:   3'- -CCGC-AUUUUG-CGCgUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 10706 0.72 0.802096
Target:  5'- uGGCGUucgauGGCGUGCACcgcaucGCGCACg -3'
miRNA:   3'- -CCGCAuu---UUGCGCGUGucau--CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 10975 0.7 0.899477
Target:  5'- cGCGUGAAuaGCGCGCGacuUGGCGUAg -3'
miRNA:   3'- cCGCAUUU--UGCGCGUgucAUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 11303 0.7 0.906073
Target:  5'- cGGCGg--GAUGCGUACGugcuaagcuGUGuGCGCGCg -3'
miRNA:   3'- -CCGCauuUUGCGCGUGU---------CAU-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 13554 0.71 0.85473
Target:  5'- cGCGUAAAACGCGUuCAGcguaccgguUAGCuGCAUc -3'
miRNA:   3'- cCGCAUUUUGCGCGuGUC---------AUCG-CGUG- -5'
22864 5' -51.4 NC_005137.2 + 14133 0.68 0.953752
Target:  5'- cGCGg--GGCaGCGCACAu--GCGCACa -3'
miRNA:   3'- cCGCauuUUG-CGCGUGUcauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 20289 0.74 0.680919
Target:  5'- aGCGcucuGCGCGCACAccGUuGCGCACg -3'
miRNA:   3'- cCGCauuuUGCGCGUGU--CAuCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 20432 0.68 0.957767
Target:  5'- aGGau--GGGCGCGCcaagacGCAGgugcgGGCGCACa -3'
miRNA:   3'- -CCgcauUUUGCGCG------UGUCa----UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 22230 0.72 0.79268
Target:  5'- aGUG-GAGACGUGCACGGagaAGUGCACu -3'
miRNA:   3'- cCGCaUUUUGCGCGUGUCa--UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 22410 0.66 0.985505
Target:  5'- uGCuUGAAGCGCaccacguaaaaGCACAcgGGCGCGCc -3'
miRNA:   3'- cCGcAUUUUGCG-----------CGUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 22829 0.74 0.691507
Target:  5'- cGCGUugccAAACGCGaggGCGGgcGCGCGCa -3'
miRNA:   3'- cCGCAu---UUUGCGCg--UGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 23663 0.69 0.935161
Target:  5'- uGGCG--AGGCGCGCAC-GUucaGGCGCc- -3'
miRNA:   3'- -CCGCauUUUGCGCGUGuCA---UCGCGug -5'
22864 5' -51.4 NC_005137.2 + 24304 0.66 0.983633
Target:  5'- cGGCGUuu-GCG-GCuGCGGUGGUggcggGCACg -3'
miRNA:   3'- -CCGCAuuuUGCgCG-UGUCAUCG-----CGUG- -5'
22864 5' -51.4 NC_005137.2 + 26297 0.71 0.870597
Target:  5'- aGCGU---ACGCGUacaACGGcGGCGCGCu -3'
miRNA:   3'- cCGCAuuuUGCGCG---UGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 26505 0.71 0.85473
Target:  5'- cGCGUuuGACGCgGCcgaugacuuaaaAguGUGGCGCGCg -3'
miRNA:   3'- cCGCAuuUUGCG-CG------------UguCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 28050 0.68 0.94497
Target:  5'- uGGCGcGAcGCGCGCugGGauGCGC-Ca -3'
miRNA:   3'- -CCGCaUUuUGCGCGugUCauCGCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.