miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 122427 0.69 0.930946
Target:  5'- cGCGgguuuugcuGCaGCGCGCGGUcuacuccgucggccgAGCGCACa -3'
miRNA:   3'- cCGCauuu-----UG-CGCGUGUCA---------------UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 118099 0.7 0.885528
Target:  5'- ---aUGAGACGCGUGCGGUGcaacaagguGCGCACc -3'
miRNA:   3'- ccgcAUUUUGCGCGUGUCAU---------CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 51701 0.7 0.892628
Target:  5'- cGGCaccguuGCGCGCGuCGGaAGCGCAUg -3'
miRNA:   3'- -CCGcauuu-UGCGCGU-GUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 97474 0.7 0.892628
Target:  5'- cGGCGUGAcGCuCGCGCAGgug-GCACg -3'
miRNA:   3'- -CCGCAUUuUGcGCGUGUCaucgCGUG- -5'
22864 5' -51.4 NC_005137.2 + 75966 0.7 0.906073
Target:  5'- -uCGUGAcGCgGCGCGCGuUGGUGCACg -3'
miRNA:   3'- ccGCAUUuUG-CGCGUGUcAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 108151 0.69 0.912412
Target:  5'- gGGCGgc-GGCG-GCGuCGGUAuGCGCGCg -3'
miRNA:   3'- -CCGCauuUUGCgCGU-GUCAU-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 110432 0.69 0.918491
Target:  5'- gGGCGcgacgguGAGCGUGCACAccgcggccGgcGCGUACa -3'
miRNA:   3'- -CCGCau-----UUUGCGCGUGU--------CauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 28782 0.69 0.918491
Target:  5'- uGUGUAaacGAACGCGCcCuc-GGCGCACa -3'
miRNA:   3'- cCGCAU---UUUGCGCGuGucaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 107983 0.69 0.929866
Target:  5'- cGCGuUGAcGCGCGCGCAGcuugaucaaUGGCGUg- -3'
miRNA:   3'- cCGC-AUUuUGCGCGUGUC---------AUCGCGug -5'
22864 5' -51.4 NC_005137.2 + 1988 0.71 0.870597
Target:  5'- cGGuCGUugccGCGUGCACAGcucGUGCACg -3'
miRNA:   3'- -CC-GCAuuu-UGCGCGUGUCau-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 64132 0.71 0.862778
Target:  5'- cGCGUGcuuauGACGUGCGUGGaAGCGCACc -3'
miRNA:   3'- cCGCAUu----UUGCGCGUGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 61489 0.71 0.862778
Target:  5'- cGCG---GACGCGgACAGUGGUGC-Ca -3'
miRNA:   3'- cCGCauuUUGCGCgUGUCAUCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 70041 0.74 0.722904
Target:  5'- cGCGUAcgugguGCGCcccgaacuucuGCACAGUGGcCGCACa -3'
miRNA:   3'- cCGCAUuu----UGCG-----------CGUGUCAUC-GCGUG- -5'
22864 5' -51.4 NC_005137.2 + 7000 0.72 0.79268
Target:  5'- aGCGgucgcCGgGCACAacGUGGCGCACg -3'
miRNA:   3'- cCGCauuuuGCgCGUGU--CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 22230 0.72 0.79268
Target:  5'- aGUG-GAGACGUGCACGGagaAGUGCACu -3'
miRNA:   3'- cCGCaUUUUGCGCGUGUCa--UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 10706 0.72 0.802096
Target:  5'- uGGCGUucgauGGCGUGCACcgcaucGCGCACg -3'
miRNA:   3'- -CCGCAuu---UUGCGCGUGucau--CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 113657 0.72 0.802096
Target:  5'- cGCGUAAAACuaGUGUACuauuuauaucagAGUGGUGCGCg -3'
miRNA:   3'- cCGCAUUUUG--CGCGUG------------UCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 77091 0.71 0.837982
Target:  5'- gGGCauuucuuGACGCGCACguAGUAGuCGUACg -3'
miRNA:   3'- -CCGcauu---UUGCGCGUG--UCAUC-GCGUG- -5'
22864 5' -51.4 NC_005137.2 + 26505 0.71 0.85473
Target:  5'- cGCGUuuGACGCgGCcgaugacuuaaaAguGUGGCGCGCg -3'
miRNA:   3'- cCGCAuuUUGCG-CG------------UguCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 76196 0.71 0.860387
Target:  5'- uGCGUuuuuGGugGCGCuuuuuauguacguuGCGGUAGCGCuGCg -3'
miRNA:   3'- cCGCAu---UUugCGCG--------------UGUCAUCGCG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.