miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 22410 0.66 0.985505
Target:  5'- uGCuUGAAGCGCaccacguaaaaGCACAcgGGCGCGCc -3'
miRNA:   3'- cCGcAUUUUGCG-----------CGUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 102933 0.67 0.961536
Target:  5'- cGCGcu--GCGUGUACAGccgucUGGCGCAUc -3'
miRNA:   3'- cCGCauuuUGCGCGUGUC-----AUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 84283 0.68 0.957767
Target:  5'- uGGUGgu-GGCGCGCguggaaACGGUGucgauguccguuGCGCGCg -3'
miRNA:   3'- -CCGCauuUUGCGCG------UGUCAU------------CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 106438 1.14 0.003185
Target:  5'- cGGCGUAAAACGCGCACAGUAGCGCACa -3'
miRNA:   3'- -CCGCAUUUUGCGCGUGUCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 128818 0.66 0.982425
Target:  5'- uGCGUA--ACGCGCAaacuaaacuugauGaAGCGCGCg -3'
miRNA:   3'- cCGCAUuuUGCGCGUgu-----------CaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 122468 0.66 0.981583
Target:  5'- aGCGUuuuGACGgGCGuagguuuGUAGCGCAUc -3'
miRNA:   3'- cCGCAuu-UUGCgCGUgu-----CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 84559 0.66 0.979346
Target:  5'- cGGCGUGc-AUGUGcCACAGcauGUGCGCc -3'
miRNA:   3'- -CCGCAUuuUGCGC-GUGUCau-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 102121 0.66 0.979346
Target:  5'- aGCGU---GCGCGCGuuUAGUAGC-CAUg -3'
miRNA:   3'- cCGCAuuuUGCGCGU--GUCAUCGcGUG- -5'
22864 5' -51.4 NC_005137.2 + 8623 0.66 0.976914
Target:  5'- gGGCGcUAAGGCgGCGgGCGugGGCGUGCu -3'
miRNA:   3'- -CCGC-AUUUUG-CGCgUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 53611 0.67 0.965065
Target:  5'- cGGCaGUAAGGa--GCAU-GUGGCGCACu -3'
miRNA:   3'- -CCG-CAUUUUgcgCGUGuCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 51077 0.67 0.974278
Target:  5'- aGCGUGAucGACGUGCACA-UA-CGCAUu -3'
miRNA:   3'- cCGCAUU--UUGCGCGUGUcAUcGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 51423 0.66 0.976914
Target:  5'- uGCG----ACGCuaucGCACGGcGGCGCGCa -3'
miRNA:   3'- cCGCauuuUGCG----CGUGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 24304 0.66 0.983633
Target:  5'- cGGCGUuu-GCG-GCuGCGGUGGUggcggGCACg -3'
miRNA:   3'- -CCGCAuuuUGCgCG-UGUCAUCG-----CGUG- -5'
22864 5' -51.4 NC_005137.2 + 35407 0.67 0.971429
Target:  5'- aGCacgu--CGCGCACAGUGcGCGgGCg -3'
miRNA:   3'- cCGcauuuuGCGCGUGUCAU-CGCgUG- -5'
22864 5' -51.4 NC_005137.2 + 111416 0.66 0.983633
Target:  5'- cGGCGUAcAGCuuguCGCGCAGUu-CGCAa -3'
miRNA:   3'- -CCGCAUuUUGc---GCGUGUCAucGCGUg -5'
22864 5' -51.4 NC_005137.2 + 100185 0.66 0.979112
Target:  5'- uGGUauuAAACGCGCACAcucccaacguguuGcUGGUGCGCg -3'
miRNA:   3'- -CCGcauUUUGCGCGUGU-------------C-AUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 67054 0.67 0.968361
Target:  5'- cGGCGUcAAACGUGUAauuauCGGgacauucGCGCACc -3'
miRNA:   3'- -CCGCAuUUUGCGCGU-----GUCau-----CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 75583 0.67 0.961536
Target:  5'- uGGCG---GACGCGgGCGGcgccGUGCGCg -3'
miRNA:   3'- -CCGCauuUUGCGCgUGUCau--CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 776 0.66 0.983633
Target:  5'- uGGCGgcgGAGGCGgugGCAUaacauuaaguGGUGGCGCuACa -3'
miRNA:   3'- -CCGCa--UUUUGCg--CGUG----------UCAUCGCG-UG- -5'
22864 5' -51.4 NC_005137.2 + 119734 0.66 0.979346
Target:  5'- uGCGUc-AGCGCGUAgCGGacgucAGCGCGCu -3'
miRNA:   3'- cCGCAuuUUGCGCGU-GUCa----UCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.