miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 112518 0.68 0.940195
Target:  5'- gGGCuUAAacuuGACGUcgGCACAGccGCGCACu -3'
miRNA:   3'- -CCGcAUU----UUGCG--CGUGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 84283 0.68 0.957767
Target:  5'- uGGUGgu-GGCGCGCguggaaACGGUGucgauguccguuGCGCGCg -3'
miRNA:   3'- -CCGCauuUUGCGCG------UGUCAU------------CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 51423 0.66 0.976914
Target:  5'- uGCG----ACGCuaucGCACGGcGGCGCGCa -3'
miRNA:   3'- cCGCauuuUGCG----CGUGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 776 0.66 0.983633
Target:  5'- uGGCGgcgGAGGCGgugGCAUaacauuaaguGGUGGCGCuACa -3'
miRNA:   3'- -CCGCa--UUUUGCg--CGUG----------UCAUCGCG-UG- -5'
22864 5' -51.4 NC_005137.2 + 81704 0.7 0.878183
Target:  5'- aGCGUAAAACa---ACGGUAGCGUGCg -3'
miRNA:   3'- cCGCAUUUUGcgcgUGUCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 11303 0.7 0.906073
Target:  5'- cGGCGg--GAUGCGUACGugcuaagcuGUGuGCGCGCg -3'
miRNA:   3'- -CCGCauuUUGCGCGUGU---------CAU-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 102933 0.67 0.961536
Target:  5'- cGCGcu--GCGUGUACAGccgucUGGCGCAUc -3'
miRNA:   3'- cCGCauuuUGCGCGUGUC-----AUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 111416 0.66 0.983633
Target:  5'- cGGCGUAcAGCuuguCGCGCAGUu-CGCAa -3'
miRNA:   3'- -CCGCAUuUUGc---GCGUGUCAucGCGUg -5'
22864 5' -51.4 NC_005137.2 + 78557 0.7 0.906073
Target:  5'- uGCGgcGGAgGCGCuugaaACGGaAGCGCGCc -3'
miRNA:   3'- cCGCauUUUgCGCG-----UGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 24304 0.66 0.983633
Target:  5'- cGGCGUuu-GCG-GCuGCGGUGGUggcggGCACg -3'
miRNA:   3'- -CCGCAuuuUGCgCG-UGUCAUCG-----CGUG- -5'
22864 5' -51.4 NC_005137.2 + 75583 0.67 0.961536
Target:  5'- uGGCG---GACGCGgGCGGcgccGUGCGCg -3'
miRNA:   3'- -CCGCauuUUGCGCgUGUCau--CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 98438 0.68 0.940195
Target:  5'- uGGCGguUAAAGCGCaaGCAGccGCGUGCa -3'
miRNA:   3'- -CCGC--AUUUUGCGcgUGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 35407 0.67 0.971429
Target:  5'- aGCacgu--CGCGCACAGUGcGCGgGCg -3'
miRNA:   3'- cCGcauuuuGCGCGUGUCAU-CGCgUG- -5'
22864 5' -51.4 NC_005137.2 + 8623 0.66 0.976914
Target:  5'- gGGCGcUAAGGCgGCGgGCGugGGCGUGCu -3'
miRNA:   3'- -CCGC-AUUUUG-CGCgUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 84559 0.66 0.979346
Target:  5'- cGGCGUGc-AUGUGcCACAGcauGUGCGCc -3'
miRNA:   3'- -CCGCAUuuUGCGC-GUGUCau-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 128818 0.66 0.982425
Target:  5'- uGCGUA--ACGCGCAaacuaaacuugauGaAGCGCGCg -3'
miRNA:   3'- cCGCAUuuUGCGCGUgu-----------CaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 106656 0.71 0.846463
Target:  5'- cGGUgGUGAAACGCGaCGCAaacGGCGUGCa -3'
miRNA:   3'- -CCG-CAUUUUGCGC-GUGUca-UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 26297 0.71 0.870597
Target:  5'- aGCGU---ACGCGUacaACGGcGGCGCGCu -3'
miRNA:   3'- cCGCAuuuUGCGCG---UGUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 125518 0.7 0.892628
Target:  5'- cGCGUAAucagcucuGCGgGCACGGUGccGCGUAUu -3'
miRNA:   3'- cCGCAUUu-------UGCgCGUGUCAU--CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 30737 0.7 0.904774
Target:  5'- gGGCGUGAaugccgcGACGCGCGCccGUgcguugcGGCGCcCg -3'
miRNA:   3'- -CCGCAUU-------UUGCGCGUGu-CA-------UCGCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.