miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 24304 0.66 0.983633
Target:  5'- cGGCGUuu-GCG-GCuGCGGUGGUggcggGCACg -3'
miRNA:   3'- -CCGCAuuuUGCgCG-UGUCAUCG-----CGUG- -5'
22864 5' -51.4 NC_005137.2 + 776 0.66 0.983633
Target:  5'- uGGCGgcgGAGGCGgugGCAUaacauuaaguGGUGGCGCuACa -3'
miRNA:   3'- -CCGCa--UUUUGCg--CGUG----------UCAUCGCG-UG- -5'
22864 5' -51.4 NC_005137.2 + 119734 0.66 0.979346
Target:  5'- uGCGUc-AGCGCGUAgCGGacgucAGCGCGCu -3'
miRNA:   3'- cCGCAuuUUGCGCGU-GUCa----UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 128818 0.66 0.982425
Target:  5'- uGCGUA--ACGCGCAaacuaaacuugauGaAGCGCGCg -3'
miRNA:   3'- cCGCAUuuUGCGCGUgu-----------CaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 111416 0.66 0.983633
Target:  5'- cGGCGUAcAGCuuguCGCGCAGUu-CGCAa -3'
miRNA:   3'- -CCGCAUuUUGc---GCGUGUCAucGCGUg -5'
22864 5' -51.4 NC_005137.2 + 22410 0.66 0.985505
Target:  5'- uGCuUGAAGCGCaccacguaaaaGCACAcgGGCGCGCc -3'
miRNA:   3'- cCGcAUUUUGCG-----------CGUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 77647 0.66 0.976914
Target:  5'- uGUGuUGAAGCaCGCACAcGUGGCcaaGCACg -3'
miRNA:   3'- cCGC-AUUUUGcGCGUGU-CAUCG---CGUG- -5'
22864 5' -51.4 NC_005137.2 + 59760 0.66 0.977911
Target:  5'- gGGCGUAGAAguguuuuuagagauuUGCaaCACGGUGggguuGCGCGCg -3'
miRNA:   3'- -CCGCAUUUU---------------GCGc-GUGUCAU-----CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 48316 0.66 0.978876
Target:  5'- uGCGcagcugguCGCGCACGGccuUGGCgGCACg -3'
miRNA:   3'- cCGCauuuu---GCGCGUGUC---AUCG-CGUG- -5'
22864 5' -51.4 NC_005137.2 + 122468 0.66 0.981583
Target:  5'- aGCGUuuuGACGgGCGuagguuuGUAGCGCAUc -3'
miRNA:   3'- cCGCAuu-UUGCgCGUgu-----CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 69256 0.66 0.979346
Target:  5'- gGGCuaUGAAacuggacgGCGUGCGCGGUcgcGGCGCGu -3'
miRNA:   3'- -CCGc-AUUU--------UGCGCGUGUCA---UCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 56515 0.66 0.981151
Target:  5'- cGGCGUuacguuggccgcAAACGCGCcguacaaacgcACGGU-GCGCAa -3'
miRNA:   3'- -CCGCAu-----------UUUGCGCG-----------UGUCAuCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 124388 0.66 0.985505
Target:  5'- -aCGUcaugcuGCGCGCGCGucGUuucAGCGCGCa -3'
miRNA:   3'- ccGCAuuu---UGCGCGUGU--CA---UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 100126 0.66 0.980264
Target:  5'- cGGgGUuucGAAGCG-GCACAGcucgcccacguacgGGCGCGCc -3'
miRNA:   3'- -CCgCA---UUUUGCgCGUGUCa-------------UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 61102 0.66 0.983828
Target:  5'- cGCGUAaaAAACGCGCACcaacgccgcguucguGuUGGUGCAa -3'
miRNA:   3'- cCGCAU--UUUGCGCGUGu--------------C-AUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 110147 0.66 0.979346
Target:  5'- cGGCGUAAGcuGCGUGCACcgcugcaacGUuGCGCc- -3'
miRNA:   3'- -CCGCAUUU--UGCGCGUGu--------CAuCGCGug -5'
22864 5' -51.4 NC_005137.2 + 68396 0.66 0.979346
Target:  5'- cGCGUcgGcCGaGCACAucgacuuguacGUGGCGCACg -3'
miRNA:   3'- cCGCAuuUuGCgCGUGU-----------CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 74864 0.66 0.985505
Target:  5'- cGCcucUAAAACaGUGC-CAGUGGuCGCACa -3'
miRNA:   3'- cCGc--AUUUUG-CGCGuGUCAUC-GCGUG- -5'
22864 5' -51.4 NC_005137.2 + 119141 0.66 0.981583
Target:  5'- cGCGUAuuACaugugucCGCACAGauuGCGCAUg -3'
miRNA:   3'- cCGCAUuuUGc------GCGUGUCau-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 72376 0.66 0.981583
Target:  5'- aGUGUAc-ACGCGCAauuCGGcGGCGCAa -3'
miRNA:   3'- cCGCAUuuUGCGCGU---GUCaUCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.