miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 106438 1.14 0.003185
Target:  5'- cGGCGUAAAACGCGCACAGUAGCGCACa -3'
miRNA:   3'- -CCGCAUUUUGCGCGUGUCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 38340 0.81 0.337903
Target:  5'- gGGCGUAAgcAGCGCGUugACAGUGGCGUu- -3'
miRNA:   3'- -CCGCAUU--UUGCGCG--UGUCAUCGCGug -5'
22864 5' -51.4 NC_005137.2 + 31016 0.78 0.501611
Target:  5'- uGGCGguugguGCGUGCGCuGcUGGCGCACg -3'
miRNA:   3'- -CCGCauuu--UGCGCGUGuC-AUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 108541 0.78 0.511759
Target:  5'- cGGCGU-GAGCGCgGUGCAGccgacggAGCGCACg -3'
miRNA:   3'- -CCGCAuUUUGCG-CGUGUCa------UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 70041 0.74 0.722904
Target:  5'- cGCGUAcgugguGCGCcccgaacuucuGCACAGUGGcCGCACa -3'
miRNA:   3'- cCGCAUuu----UGCG-----------CGUGUCAUC-GCGUG- -5'
22864 5' -51.4 NC_005137.2 + 22829 0.74 0.691507
Target:  5'- cGCGUugccAAACGCGaggGCGGgcGCGCGCa -3'
miRNA:   3'- cCGCAu---UUUGCGCg--UGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 20289 0.74 0.680919
Target:  5'- aGCGcucuGCGCGCACAccGUuGCGCACg -3'
miRNA:   3'- cCGCauuuUGCGCGUGU--CAuCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 71373 0.73 0.753532
Target:  5'- cGGCGUGc--CGuUGCAaaaAGUGGCGCGCu -3'
miRNA:   3'- -CCGCAUuuuGC-GCGUg--UCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 69143 0.73 0.753532
Target:  5'- aGCGU---ACGCGCaaaaauuuuauaACGGUGGCGCAg -3'
miRNA:   3'- cCGCAuuuUGCGCG------------UGUCAUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 104652 0.73 0.743425
Target:  5'- uGCGUuuuGCGUGC-CGGUAGCGUAa -3'
miRNA:   3'- cCGCAuuuUGCGCGuGUCAUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 66848 0.72 0.79268
Target:  5'- cGGCGccguuAAACGCGCAgGGU-GCGCu- -3'
miRNA:   3'- -CCGCau---UUUGCGCGUgUCAuCGCGug -5'
22864 5' -51.4 NC_005137.2 + 112189 0.72 0.802096
Target:  5'- cGGCGUAAAACaaucaGCGUucuGGUcGCGCGCa -3'
miRNA:   3'- -CCGCAUUUUG-----CGCGug-UCAuCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 113657 0.72 0.802096
Target:  5'- cGCGUAAAACuaGUGUACuauuuauaucagAGUGGUGCGCg -3'
miRNA:   3'- cCGCAUUUUG--CGCGUG------------UCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 58671 0.72 0.819515
Target:  5'- cGGCGcAGcuCGCGCaauucgcguucggACAGUGGCGcCGCg -3'
miRNA:   3'- -CCGCaUUuuGCGCG-------------UGUCAUCGC-GUG- -5'
22864 5' -51.4 NC_005137.2 + 10706 0.72 0.802096
Target:  5'- uGGCGUucgauGGCGUGCACcgcaucGCGCACg -3'
miRNA:   3'- -CCGCAuu---UUGCGCGUGucau--CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 22230 0.72 0.79268
Target:  5'- aGUG-GAGACGUGCACGGagaAGUGCACu -3'
miRNA:   3'- cCGCaUUUUGCGCGUGUCa--UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 7873 0.72 0.819515
Target:  5'- aGCGUGccgucacguaggaAAACGUGCACAccGGCGCAg -3'
miRNA:   3'- cCGCAU-------------UUUGCGCGUGUcaUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 7000 0.72 0.79268
Target:  5'- aGCGgucgcCGgGCACAacGUGGCGCACg -3'
miRNA:   3'- cCGCauuuuGCgCGUGU--CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 26505 0.71 0.85473
Target:  5'- cGCGUuuGACGCgGCcgaugacuuaaaAguGUGGCGCGCg -3'
miRNA:   3'- cCGCAuuUUGCG-CG------------UguCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 64132 0.71 0.862778
Target:  5'- cGCGUGcuuauGACGUGCGUGGaAGCGCACc -3'
miRNA:   3'- cCGCAUu----UUGCGCGUGUCaUCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.