miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 129522 0.67 0.974278
Target:  5'- ----cGAAACGUGCugGcgagcauuGUGGCGCGCa -3'
miRNA:   3'- ccgcaUUUUGCGCGugU--------CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 128818 0.66 0.982425
Target:  5'- uGCGUA--ACGCGCAaacuaaacuugauGaAGCGCGCg -3'
miRNA:   3'- cCGCAUuuUGCGCGUgu-----------CaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 125518 0.7 0.892628
Target:  5'- cGCGUAAucagcucuGCGgGCACGGUGccGCGUAUu -3'
miRNA:   3'- cCGCAUUu-------UGCgCGUGUCAU--CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 124388 0.66 0.985505
Target:  5'- -aCGUcaugcuGCGCGCGCGucGUuucAGCGCGCa -3'
miRNA:   3'- ccGCAuuu---UGCGCGUGU--CA---UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 123923 0.7 0.878183
Target:  5'- -aCGUAAAuuACGUGCACAcgAGCGUGCg -3'
miRNA:   3'- ccGCAUUU--UGCGCGUGUcaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 122468 0.66 0.981583
Target:  5'- aGCGUuuuGACGgGCGuagguuuGUAGCGCAUc -3'
miRNA:   3'- cCGCAuu-UUGCgCGUgu-----CAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 122427 0.69 0.930946
Target:  5'- cGCGgguuuugcuGCaGCGCGCGGUcuacuccgucggccgAGCGCACa -3'
miRNA:   3'- cCGCauuu-----UG-CGCGUGUCA---------------UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 119734 0.66 0.979346
Target:  5'- uGCGUc-AGCGCGUAgCGGacgucAGCGCGCu -3'
miRNA:   3'- cCGCAuuUUGCGCGU-GUCa----UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 119141 0.66 0.981583
Target:  5'- cGCGUAuuACaugugucCGCACAGauuGCGCAUg -3'
miRNA:   3'- cCGCAUuuUGc------GCGUGUCau-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 118099 0.7 0.885528
Target:  5'- ---aUGAGACGCGUGCGGUGcaacaagguGCGCACc -3'
miRNA:   3'- ccgcAUUUUGCGCGUGUCAU---------CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 116841 0.67 0.965065
Target:  5'- uGUGUuugAGGACGCGUacguggauuggaGCGGUGuGCGCAUg -3'
miRNA:   3'- cCGCA---UUUUGCGCG------------UGUCAU-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 113657 0.72 0.802096
Target:  5'- cGCGUAAAACuaGUGUACuauuuauaucagAGUGGUGCGCg -3'
miRNA:   3'- cCGCAUUUUG--CGCGUG------------UCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 112518 0.68 0.940195
Target:  5'- gGGCuUAAacuuGACGUcgGCACAGccGCGCACu -3'
miRNA:   3'- -CCGcAUU----UUGCG--CGUGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 112189 0.72 0.802096
Target:  5'- cGGCGUAAAACaaucaGCGUucuGGUcGCGCGCa -3'
miRNA:   3'- -CCGCAUUUUG-----CGCGug-UCAuCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 111416 0.66 0.983633
Target:  5'- cGGCGUAcAGCuuguCGCGCAGUu-CGCAa -3'
miRNA:   3'- -CCGCAUuUUGc---GCGUGUCAucGCGUg -5'
22864 5' -51.4 NC_005137.2 + 110723 0.67 0.965065
Target:  5'- cGGUGU---GCGCGCAgAGcgcuuGUGCGCc -3'
miRNA:   3'- -CCGCAuuuUGCGCGUgUCau---CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 110651 0.67 0.974278
Target:  5'- cGGCGUuuGGCuuGUGCccgugACGGgcGUGCGCg -3'
miRNA:   3'- -CCGCAuuUUG--CGCG-----UGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 110432 0.69 0.918491
Target:  5'- gGGCGcgacgguGAGCGUGCACAccgcggccGgcGCGUACa -3'
miRNA:   3'- -CCGCau-----UUUGCGCGUGU--------CauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 110147 0.66 0.979346
Target:  5'- cGGCGUAAGcuGCGUGCACcgcugcaacGUuGCGCc- -3'
miRNA:   3'- -CCGCAUUU--UGCGCGUGu--------CAuCGCGug -5'
22864 5' -51.4 NC_005137.2 + 108541 0.78 0.511759
Target:  5'- cGGCGU-GAGCGCgGUGCAGccgacggAGCGCACg -3'
miRNA:   3'- -CCGCAuUUUGCG-CGUGUCa------UCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.