miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22864 5' -51.4 NC_005137.2 + 108151 0.69 0.912412
Target:  5'- gGGCGgc-GGCG-GCGuCGGUAuGCGCGCg -3'
miRNA:   3'- -CCGCauuUUGCgCGU-GUCAU-CGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 107983 0.69 0.929866
Target:  5'- cGCGuUGAcGCGCGCGCAGcuugaucaaUGGCGUg- -3'
miRNA:   3'- cCGC-AUUuUGCGCGUGUC---------AUCGCGug -5'
22864 5' -51.4 NC_005137.2 + 106656 0.71 0.846463
Target:  5'- cGGUgGUGAAACGCGaCGCAaacGGCGUGCa -3'
miRNA:   3'- -CCG-CAUUUUGCGC-GUGUca-UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 106438 1.14 0.003185
Target:  5'- cGGCGUAAAACGCGCACAGUAGCGCACa -3'
miRNA:   3'- -CCGCAUUUUGCGCGUGUCAUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 104652 0.73 0.743425
Target:  5'- uGCGUuuuGCGUGC-CGGUAGCGUAa -3'
miRNA:   3'- cCGCAuuuUGCGCGuGUCAUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 102933 0.67 0.961536
Target:  5'- cGCGcu--GCGUGUACAGccgucUGGCGCAUc -3'
miRNA:   3'- cCGCauuuUGCGCGUGUC-----AUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 102121 0.66 0.979346
Target:  5'- aGCGU---GCGCGCGuuUAGUAGC-CAUg -3'
miRNA:   3'- cCGCAuuuUGCGCGU--GUCAUCGcGUG- -5'
22864 5' -51.4 NC_005137.2 + 101154 0.71 0.837982
Target:  5'- cGGCGUugaGAAGCGCGCGacccuuuuuUAGCGCGg -3'
miRNA:   3'- -CCGCA---UUUUGCGCGUguc------AUCGCGUg -5'
22864 5' -51.4 NC_005137.2 + 100185 0.66 0.979112
Target:  5'- uGGUauuAAACGCGCACAcucccaacguguuGcUGGUGCGCg -3'
miRNA:   3'- -CCGcauUUUGCGCGUGU-------------C-AUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 100126 0.66 0.980264
Target:  5'- cGGgGUuucGAAGCG-GCACAGcucgcccacguacgGGCGCGCc -3'
miRNA:   3'- -CCgCA---UUUUGCgCGUGUCa-------------UCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 99974 0.67 0.961536
Target:  5'- cGCGccucuuCGUGCGcCAGcAGCGCACg -3'
miRNA:   3'- cCGCauuuu-GCGCGU-GUCaUCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 98438 0.68 0.940195
Target:  5'- uGGCGguUAAAGCGCaaGCAGccGCGUGCa -3'
miRNA:   3'- -CCGC--AUUUUGCGcgUGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 97996 0.68 0.953752
Target:  5'- cGGCGUGGGuGCGCcCGCcaAGUGGCcagcguGCACg -3'
miRNA:   3'- -CCGCAUUU-UGCGcGUG--UCAUCG------CGUG- -5'
22864 5' -51.4 NC_005137.2 + 97474 0.7 0.892628
Target:  5'- cGGCGUGAcGCuCGCGCAGgug-GCACg -3'
miRNA:   3'- -CCGCAUUuUGcGCGUGUCaucgCGUG- -5'
22864 5' -51.4 NC_005137.2 + 94561 0.68 0.94497
Target:  5'- uGGCGaUAAAACGCGUAUA-UAaCGCAUg -3'
miRNA:   3'- -CCGC-AUUUUGCGCGUGUcAUcGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 93676 0.68 0.940195
Target:  5'- cGCGU-AGAUGCGCaACAGgcccAGCGC-Cg -3'
miRNA:   3'- cCGCAuUUUGCGCG-UGUCa---UCGCGuG- -5'
22864 5' -51.4 NC_005137.2 + 93447 0.69 0.937206
Target:  5'- uGCGUucggggaugcauACGgGCACGGU-GCGCGCc -3'
miRNA:   3'- cCGCAuuu---------UGCgCGUGUCAuCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 93407 0.69 0.935161
Target:  5'- gGGCGUAAAA-GUGUGCAGc-GUGUACg -3'
miRNA:   3'- -CCGCAUUUUgCGCGUGUCauCGCGUG- -5'
22864 5' -51.4 NC_005137.2 + 93237 0.7 0.878183
Target:  5'- cGGUGcaugauUGAAACGCGCACAaacGGCGCu- -3'
miRNA:   3'- -CCGC------AUUUUGCGCGUGUca-UCGCGug -5'
22864 5' -51.4 NC_005137.2 + 84559 0.66 0.979346
Target:  5'- cGGCGUGc-AUGUGcCACAGcauGUGCGCc -3'
miRNA:   3'- -CCGCAUuuUGCGC-GUGUCau-CGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.