miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22865 5' -49.9 NC_005137.2 + 28288 0.7 0.925099
Target:  5'- cACUUUGUuuaaGCGGCGcCAGUCAAACu- -3'
miRNA:   3'- aUGAGACA----UGCCGCcGUUAGUUUGug -5'
22865 5' -49.9 NC_005137.2 + 26700 0.68 0.966219
Target:  5'- gGCgCUGaACGGCGGCGAagAAGC-Cg -3'
miRNA:   3'- aUGaGACaUGCCGCCGUUagUUUGuG- -5'
22865 5' -49.9 NC_005137.2 + 13029 0.66 0.993186
Target:  5'- aAUUCUccgccGUgACGGUGGUuucGUCGGACACg -3'
miRNA:   3'- aUGAGA-----CA-UGCCGCCGu--UAGUUUGUG- -5'
22865 5' -49.9 NC_005137.2 + 812 0.67 0.986416
Target:  5'- cGCUacagGUgGCGGCGGCAcgUuuACACc -3'
miRNA:   3'- aUGAga--CA-UGCCGCCGUuaGuuUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.