miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22867 5' -59.5 NC_005137.2 + 103535 1.1 0.001102
Target:  5'- uUGACUGGCGGCGCACGUCGCGACGUCa -3'
miRNA:   3'- -ACUGACCGCCGCGUGCAGCGCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 38651 0.78 0.163312
Target:  5'- cGACgcugGGCaGGCGCGCGUUGCGGCa-- -3'
miRNA:   3'- aCUGa---CCG-CCGCGUGCAGCGCUGcag -5'
22867 5' -59.5 NC_005137.2 + 75587 0.75 0.2471
Target:  5'- gGACgcgGGCGGCGC-CGUgCGCGugGa- -3'
miRNA:   3'- aCUGa--CCGCCGCGuGCA-GCGCugCag -5'
22867 5' -59.5 NC_005137.2 + 102950 0.75 0.277124
Target:  5'- cGuCUGGCGcaucccaGCGCGCGUCGCGccACGUUc -3'
miRNA:   3'- aCuGACCGC-------CGCGUGCAGCGC--UGCAG- -5'
22867 5' -59.5 NC_005137.2 + 755 0.74 0.290857
Target:  5'- cGGCggUGGCGGCgGCACGUUugGCGGCGg- -3'
miRNA:   3'- aCUG--ACCGCCG-CGUGCAG--CGCUGCag -5'
22867 5' -59.5 NC_005137.2 + 95767 0.73 0.340455
Target:  5'- -aGCgGGCGuCGCACGUCGgGACGUUu -3'
miRNA:   3'- acUGaCCGCcGCGUGCAGCgCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 111160 0.73 0.34726
Target:  5'- cUGGCguaaacgGGCGGCGgAggcuuugUGUCGCGGCGUUg -3'
miRNA:   3'- -ACUGa------CCGCCGCgU-------GCAGCGCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 69265 0.72 0.371433
Target:  5'- -aACUGGaCGGCGUGCGcggUCGCGGCG-Cg -3'
miRNA:   3'- acUGACC-GCCGCGUGC---AGCGCUGCaG- -5'
22867 5' -59.5 NC_005137.2 + 100247 0.72 0.403434
Target:  5'- cGAUccgGGCgccgcaacgcacgGGCGCGCGUCGCGGCa-- -3'
miRNA:   3'- aCUGa--CCG-------------CCGCGUGCAGCGCUGcag -5'
22867 5' -59.5 NC_005137.2 + 84279 0.72 0.404278
Target:  5'- aGGCUGGUgguGGCGCGCGUggaaacggUGuCGAUGUCc -3'
miRNA:   3'- aCUGACCG---CCGCGUGCA--------GC-GCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 114798 0.71 0.430083
Target:  5'- gGGC-GGCuuGCGCACGUCGuCGuCGUCa -3'
miRNA:   3'- aCUGaCCGc-CGCGUGCAGC-GCuGCAG- -5'
22867 5' -59.5 NC_005137.2 + 385 0.7 0.493828
Target:  5'- -uGCUGGCuuugucGGCGCGCGUgucCGCGcuuuCGUCa -3'
miRNA:   3'- acUGACCG------CCGCGUGCA---GCGCu---GCAG- -5'
22867 5' -59.5 NC_005137.2 + 113674 0.7 0.500445
Target:  5'- uUGuuUGGCGccauuaucugcgacGCGCACGUCGCacagcGCGUCa -3'
miRNA:   3'- -ACugACCGC--------------CGCGUGCAGCGc----UGCAG- -5'
22867 5' -59.5 NC_005137.2 + 98370 0.69 0.532137
Target:  5'- -cGCcGGUuuGGCGC-CGUCGCGACGg- -3'
miRNA:   3'- acUGaCCG--CCGCGuGCAGCGCUGCag -5'
22867 5' -59.5 NC_005137.2 + 34629 0.69 0.541886
Target:  5'- uUGAUUGGCGGUuuGCGCGcCGUGuGCGa- -3'
miRNA:   3'- -ACUGACCGCCG--CGUGCaGCGC-UGCag -5'
22867 5' -59.5 NC_005137.2 + 100210 0.69 0.561554
Target:  5'- cGugUuGCuGGUGCGCGUCGaCGACGa- -3'
miRNA:   3'- aCugAcCG-CCGCGUGCAGC-GCUGCag -5'
22867 5' -59.5 NC_005137.2 + 31035 0.69 0.581411
Target:  5'- -uGCUGGCgcacgaagaGGCGCGCGgcCGCGGcCGUUg -3'
miRNA:   3'- acUGACCG---------CCGCGUGCa-GCGCU-GCAG- -5'
22867 5' -59.5 NC_005137.2 + 26532 0.68 0.605421
Target:  5'- aGugUGGCGcGCGUacggcaaguuuguuaGCGguaGCGACGUUc -3'
miRNA:   3'- aCugACCGC-CGCG---------------UGCag-CGCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 808 0.68 0.618479
Target:  5'- gUGGCgcuacaggUGGCGGCgGCACGUUuacaccagguugcgGCGAUGUa -3'
miRNA:   3'- -ACUG--------ACCGCCG-CGUGCAG--------------CGCUGCAg -5'
22867 5' -59.5 NC_005137.2 + 125950 0.68 0.641612
Target:  5'- -----cGCGGCGCACG-CaCGACGUCu -3'
miRNA:   3'- acugacCGCCGCGUGCaGcGCUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.