Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 385 | 0.7 | 0.493828 |
Target: 5'- -uGCUGGCuuugucGGCGCGCGUgucCGCGcuuuCGUCa -3' miRNA: 3'- acUGACCG------CCGCGUGCA---GCGCu---GCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 755 | 0.74 | 0.290857 |
Target: 5'- cGGCggUGGCGGCgGCACGUUugGCGGCGg- -3' miRNA: 3'- aCUG--ACCGCCG-CGUGCAG--CGCUGCag -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 808 | 0.68 | 0.618479 |
Target: 5'- gUGGCgcuacaggUGGCGGCgGCACGUUuacaccagguugcgGCGAUGUa -3' miRNA: 3'- -ACUG--------ACCGCCG-CGUGCAG--------------CGCUGCAg -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 11776 | 0.66 | 0.711371 |
Target: 5'- aGGCUGGaaGUGCGCaGUCGCaaGGCGg- -3' miRNA: 3'- aCUGACCgcCGCGUG-CAGCG--CUGCag -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 15261 | 0.66 | 0.759413 |
Target: 5'- ----cGGC-GCGCACGUUGCGuugcaccuugGCGUCc -3' miRNA: 3'- acugaCCGcCGCGUGCAGCGC----------UGCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 26532 | 0.68 | 0.605421 |
Target: 5'- aGugUGGCGcGCGUacggcaaguuuguuaGCGguaGCGACGUUc -3' miRNA: 3'- aCugACCGC-CGCG---------------UGCag-CGCUGCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 31035 | 0.69 | 0.581411 |
Target: 5'- -uGCUGGCgcacgaagaGGCGCGCGgcCGCGGcCGUUg -3' miRNA: 3'- acUGACCG---------CCGCGUGCa-GCGCU-GCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 32197 | 0.66 | 0.740461 |
Target: 5'- ----cGGuCGGCGCACG--GCGGCGUUu -3' miRNA: 3'- acugaCC-GCCGCGUGCagCGCUGCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 34629 | 0.69 | 0.541886 |
Target: 5'- uUGAUUGGCGGUuuGCGCGcCGUGuGCGa- -3' miRNA: 3'- -ACUGACCGCCG--CGUGCaGCGC-UGCag -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 38651 | 0.78 | 0.163312 |
Target: 5'- cGACgcugGGCaGGCGCGCGUUGCGGCa-- -3' miRNA: 3'- aCUGa---CCG-CCGCGUGCAGCGCUGcag -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 39283 | 0.67 | 0.701533 |
Target: 5'- -cGCUGGCGua-CACGUCGCGcgcaaaaaguGCGUCg -3' miRNA: 3'- acUGACCGCcgcGUGCAGCGC----------UGCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 48131 | 0.66 | 0.749987 |
Target: 5'- ----aGGCGGCaCGCGUuuucUGCGGCGUUu -3' miRNA: 3'- acugaCCGCCGcGUGCA----GCGCUGCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 48757 | 0.67 | 0.681695 |
Target: 5'- cGAacaaGGCGGCGCGauCGUuggaCGCGGCGcCg -3' miRNA: 3'- aCUga--CCGCCGCGU--GCA----GCGCUGCaG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 62339 | 0.66 | 0.739503 |
Target: 5'- -uGCUGucauccgccacgcGCGuGCGCACGUUGuUGAUGUCg -3' miRNA: 3'- acUGAC-------------CGC-CGCGUGCAGC-GCUGCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 63459 | 0.66 | 0.730844 |
Target: 5'- -cGCU--CGGCGCGCGuuugugccgccUCGCGGCGUUg -3' miRNA: 3'- acUGAccGCCGCGUGC-----------AGCGCUGCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 69265 | 0.72 | 0.371433 |
Target: 5'- -aACUGGaCGGCGUGCGcggUCGCGGCG-Cg -3' miRNA: 3'- acUGACC-GCCGCGUGC---AGCGCUGCaG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 72801 | 0.68 | 0.641612 |
Target: 5'- --gUUGGCGGCGCGCGcUGC--CGUCu -3' miRNA: 3'- acuGACCGCCGCGUGCaGCGcuGCAG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 75587 | 0.75 | 0.2471 |
Target: 5'- gGACgcgGGCGGCGC-CGUgCGCGugGa- -3' miRNA: 3'- aCUGa--CCGCCGCGuGCA-GCGCugCag -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 75968 | 0.66 | 0.721144 |
Target: 5'- gUGAC--GCGGCGCGCGUUGgugcaCGGCG-Ca -3' miRNA: 3'- -ACUGacCGCCGCGUGCAGC-----GCUGCaG- -5' |
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22867 | 5' | -59.5 | NC_005137.2 | + | 78384 | 0.66 | 0.721144 |
Target: 5'- gUGGCUgaGGCGGCGguUGUUGagGugGUg -3' miRNA: 3'- -ACUGA--CCGCCGCguGCAGCg-CugCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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