Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 84279 | 0.72 | 0.404278 |
Target: 5'- aGGCUGGUgguGGCGCGCGUggaaacggUGuCGAUGUCc -3' miRNA: 3'- aCUGACCG---CCGCGUGCA--------GC-GCUGCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 95601 | 0.67 | 0.651663 |
Target: 5'- aUGAUgGGCGcGCGCcgauuccaaauGCGUCGCGucauUGUCc -3' miRNA: 3'- -ACUGaCCGC-CGCG-----------UGCAGCGCu---GCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 95767 | 0.73 | 0.340455 |
Target: 5'- -aGCgGGCGuCGCACGUCGgGACGUUu -3' miRNA: 3'- acUGaCCGCcGCGUGCAGCgCUGCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 98370 | 0.69 | 0.532137 |
Target: 5'- -cGCcGGUuuGGCGC-CGUCGCGACGg- -3' miRNA: 3'- acUGaCCG--CCGCGuGCAGCGCUGCag -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 99518 | 0.67 | 0.690646 |
Target: 5'- cGGCUGGCcGCGCAaGUuuucCGCGuuuaacuGCGUCa -3' miRNA: 3'- aCUGACCGcCGCGUgCA----GCGC-------UGCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 100210 | 0.69 | 0.561554 |
Target: 5'- cGugUuGCuGGUGCGCGUCGaCGACGa- -3' miRNA: 3'- aCugAcCG-CCGCGUGCAGC-GCUGCag -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 100247 | 0.72 | 0.403434 |
Target: 5'- cGAUccgGGCgccgcaacgcacgGGCGCGCGUCGCGGCa-- -3' miRNA: 3'- aCUGa--CCG-------------CCGCGUGCAGCGCUGcag -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 102950 | 0.75 | 0.277124 |
Target: 5'- cGuCUGGCGcaucccaGCGCGCGUCGCGccACGUUc -3' miRNA: 3'- aCuGACCGC-------CGCGUGCAGCGC--UGCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 103535 | 1.1 | 0.001102 |
Target: 5'- uUGACUGGCGGCGCACGUCGCGACGUCa -3' miRNA: 3'- -ACUGACCGCCGCGUGCAGCGCUGCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 107134 | 0.66 | 0.759413 |
Target: 5'- cGACgaaGGCGGCgGCGgGUUggGUGACGcCg -3' miRNA: 3'- aCUGa--CCGCCG-CGUgCAG--CGCUGCaG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 109597 | 0.66 | 0.711371 |
Target: 5'- uUGGCgGGUGGCGC-UGUCGUaaaaccCGUCa -3' miRNA: 3'- -ACUGaCCGCCGCGuGCAGCGcu----GCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 111160 | 0.73 | 0.34726 |
Target: 5'- cUGGCguaaacgGGCGGCGgAggcuuugUGUCGCGGCGUUg -3' miRNA: 3'- -ACUGa------CCGCCGCgU-------GCAGCGCUGCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 113674 | 0.7 | 0.500445 |
Target: 5'- uUGuuUGGCGccauuaucugcgacGCGCACGUCGCacagcGCGUCa -3' miRNA: 3'- -ACugACCGC--------------CGCGUGCAGCGc----UGCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 114798 | 0.71 | 0.430083 |
Target: 5'- gGGC-GGCuuGCGCACGUCGuCGuCGUCa -3' miRNA: 3'- aCUGaCCGc-CGCGUGCAGC-GCuGCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 117927 | 0.66 | 0.759413 |
Target: 5'- -aACUGGUGGCaaguucggGCGCGUuucgcaaaCGCGGUGUCg -3' miRNA: 3'- acUGACCGCCG--------CGUGCA--------GCGCUGCAG- -5' |
|||||||
22867 | 5' | -59.5 | NC_005137.2 | + | 125950 | 0.68 | 0.641612 |
Target: 5'- -----cGCGGCGCACG-CaCGACGUCu -3' miRNA: 3'- acugacCGCCGCGUGCaGcGCUGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home