miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22867 5' -59.5 NC_005137.2 + 125950 0.68 0.641612
Target:  5'- -----cGCGGCGCACG-CaCGACGUCu -3'
miRNA:   3'- acugacCGCCGCGUGCaGcGCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 117927 0.66 0.759413
Target:  5'- -aACUGGUGGCaaguucggGCGCGUuucgcaaaCGCGGUGUCg -3'
miRNA:   3'- acUGACCGCCG--------CGUGCA--------GCGCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 114798 0.71 0.430083
Target:  5'- gGGC-GGCuuGCGCACGUCGuCGuCGUCa -3'
miRNA:   3'- aCUGaCCGc-CGCGUGCAGC-GCuGCAG- -5'
22867 5' -59.5 NC_005137.2 + 113674 0.7 0.500445
Target:  5'- uUGuuUGGCGccauuaucugcgacGCGCACGUCGCacagcGCGUCa -3'
miRNA:   3'- -ACugACCGC--------------CGCGUGCAGCGc----UGCAG- -5'
22867 5' -59.5 NC_005137.2 + 111160 0.73 0.34726
Target:  5'- cUGGCguaaacgGGCGGCGgAggcuuugUGUCGCGGCGUUg -3'
miRNA:   3'- -ACUGa------CCGCCGCgU-------GCAGCGCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 109597 0.66 0.711371
Target:  5'- uUGGCgGGUGGCGC-UGUCGUaaaaccCGUCa -3'
miRNA:   3'- -ACUGaCCGCCGCGuGCAGCGcu----GCAG- -5'
22867 5' -59.5 NC_005137.2 + 107134 0.66 0.759413
Target:  5'- cGACgaaGGCGGCgGCGgGUUggGUGACGcCg -3'
miRNA:   3'- aCUGa--CCGCCG-CGUgCAG--CGCUGCaG- -5'
22867 5' -59.5 NC_005137.2 + 103535 1.1 0.001102
Target:  5'- uUGACUGGCGGCGCACGUCGCGACGUCa -3'
miRNA:   3'- -ACUGACCGCCGCGUGCAGCGCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 102950 0.75 0.277124
Target:  5'- cGuCUGGCGcaucccaGCGCGCGUCGCGccACGUUc -3'
miRNA:   3'- aCuGACCGC-------CGCGUGCAGCGC--UGCAG- -5'
22867 5' -59.5 NC_005137.2 + 100247 0.72 0.403434
Target:  5'- cGAUccgGGCgccgcaacgcacgGGCGCGCGUCGCGGCa-- -3'
miRNA:   3'- aCUGa--CCG-------------CCGCGUGCAGCGCUGcag -5'
22867 5' -59.5 NC_005137.2 + 100210 0.69 0.561554
Target:  5'- cGugUuGCuGGUGCGCGUCGaCGACGa- -3'
miRNA:   3'- aCugAcCG-CCGCGUGCAGC-GCUGCag -5'
22867 5' -59.5 NC_005137.2 + 99518 0.67 0.690646
Target:  5'- cGGCUGGCcGCGCAaGUuuucCGCGuuuaacuGCGUCa -3'
miRNA:   3'- aCUGACCGcCGCGUgCA----GCGC-------UGCAG- -5'
22867 5' -59.5 NC_005137.2 + 98370 0.69 0.532137
Target:  5'- -cGCcGGUuuGGCGC-CGUCGCGACGg- -3'
miRNA:   3'- acUGaCCG--CCGCGuGCAGCGCUGCag -5'
22867 5' -59.5 NC_005137.2 + 95767 0.73 0.340455
Target:  5'- -aGCgGGCGuCGCACGUCGgGACGUUu -3'
miRNA:   3'- acUGaCCGCcGCGUGCAGCgCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 95601 0.67 0.651663
Target:  5'- aUGAUgGGCGcGCGCcgauuccaaauGCGUCGCGucauUGUCc -3'
miRNA:   3'- -ACUGaCCGC-CGCG-----------UGCAGCGCu---GCAG- -5'
22867 5' -59.5 NC_005137.2 + 84279 0.72 0.404278
Target:  5'- aGGCUGGUgguGGCGCGCGUggaaacggUGuCGAUGUCc -3'
miRNA:   3'- aCUGACCG---CCGCGUGCA--------GC-GCUGCAG- -5'
22867 5' -59.5 NC_005137.2 + 78384 0.66 0.721144
Target:  5'- gUGGCUgaGGCGGCGguUGUUGagGugGUg -3'
miRNA:   3'- -ACUGA--CCGCCGCguGCAGCg-CugCAg -5'
22867 5' -59.5 NC_005137.2 + 75968 0.66 0.721144
Target:  5'- gUGAC--GCGGCGCGCGUUGgugcaCGGCG-Ca -3'
miRNA:   3'- -ACUGacCGCCGCGUGCAGC-----GCUGCaG- -5'
22867 5' -59.5 NC_005137.2 + 75587 0.75 0.2471
Target:  5'- gGACgcgGGCGGCGC-CGUgCGCGugGa- -3'
miRNA:   3'- aCUGa--CCGCCGCGuGCA-GCGCugCag -5'
22867 5' -59.5 NC_005137.2 + 72801 0.68 0.641612
Target:  5'- --gUUGGCGGCGCGCGcUGC--CGUCu -3'
miRNA:   3'- acuGACCGCCGCGUGCaGCGcuGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.