miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 3' -51.4 NC_005137.2 + 31690 0.69 0.927768
Target:  5'- -cGCGUGGUUGUGCGguCGCaccGACGu -3'
miRNA:   3'- cuUGCGCCGAUAUGCguGCGcu-UUGC- -5'
22868 3' -51.4 NC_005137.2 + 32192 0.69 0.927768
Target:  5'- aAACGCGGUcg-GCGCACgGCGGcguuuggcaGACGa -3'
miRNA:   3'- cUUGCGCCGauaUGCGUG-CGCU---------UUGC- -5'
22868 3' -51.4 NC_005137.2 + 34585 0.73 0.761234
Target:  5'- cAACGCGGCgg-GCGCgucgccGCGCGGguAGCGg -3'
miRNA:   3'- cUUGCGCCGauaUGCG------UGCGCU--UUGC- -5'
22868 3' -51.4 NC_005137.2 + 34918 0.68 0.963884
Target:  5'- -uGCGCGGUUAUucuuaaaacaaauuGCGCACGagccgaguguucaaGAAACGc -3'
miRNA:   3'- cuUGCGCCGAUA--------------UGCGUGCg-------------CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 35064 0.71 0.875745
Target:  5'- uAACGCGaGC-AUAUGCACGUuAAACGg -3'
miRNA:   3'- cUUGCGC-CGaUAUGCGUGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 35098 0.74 0.700083
Target:  5'- -cACGCGGCUGUuugGCGCaaACGCGGucAACa -3'
miRNA:   3'- cuUGCGCCGAUA---UGCG--UGCGCU--UUGc -5'
22868 3' -51.4 NC_005137.2 + 35365 0.7 0.897131
Target:  5'- --cCGuCGGCgcacgGCGCACGCGGAaaaaACGa -3'
miRNA:   3'- cuuGC-GCCGaua--UGCGUGCGCUU----UGC- -5'
22868 3' -51.4 NC_005137.2 + 42067 0.69 0.943067
Target:  5'- uGGCGCgGGCgaaACGCGCGUGuuuAGCGu -3'
miRNA:   3'- cUUGCG-CCGauaUGCGUGCGCu--UUGC- -5'
22868 3' -51.4 NC_005137.2 + 42763 0.72 0.799671
Target:  5'- cAGCGUGGCUAUcACGU-UGCGAGGCa -3'
miRNA:   3'- cUUGCGCCGAUA-UGCGuGCGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 48778 0.73 0.78074
Target:  5'- uGGACGCGGCgc--CGCACaGCGuguGCGg -3'
miRNA:   3'- -CUUGCGCCGauauGCGUG-CGCuu-UGC- -5'
22868 3' -51.4 NC_005137.2 + 51698 0.7 0.910151
Target:  5'- --uUGCGGCaccguUGCGCGCGUcgGAAGCGc -3'
miRNA:   3'- cuuGCGCCGau---AUGCGUGCG--CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 56341 0.7 0.91628
Target:  5'- aGAACGUGGUg--ACGCAgGUGAcGCu -3'
miRNA:   3'- -CUUGCGCCGauaUGCGUgCGCUuUGc -5'
22868 3' -51.4 NC_005137.2 + 57234 0.66 0.980521
Target:  5'- cGAACGaGGCUAcGCcCGCGCcAAACGa -3'
miRNA:   3'- -CUUGCgCCGAUaUGcGUGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 58642 0.68 0.956083
Target:  5'- -uGCGCGuguacaCUAgcgUGCACGCGGAGCGg -3'
miRNA:   3'- cuUGCGCc-----GAUau-GCGUGCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 61038 0.67 0.970057
Target:  5'- -uGCGCGGCggucuUGUAauCGUACGCGuuuGCGc -3'
miRNA:   3'- cuUGCGCCG-----AUAU--GCGUGCGCuu-UGC- -5'
22868 3' -51.4 NC_005137.2 + 63338 0.68 0.959929
Target:  5'- -cACGCGcGCUGgaACGCACGCuuAACc -3'
miRNA:   3'- cuUGCGC-CGAUa-UGCGUGCGcuUUGc -5'
22868 3' -51.4 NC_005137.2 + 63639 0.67 0.972985
Target:  5'- --cCGCGGCgacgGUcGCGCAuCGCGucGCGc -3'
miRNA:   3'- cuuGCGCCGa---UA-UGCGU-GCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 63921 0.66 0.987979
Target:  5'- ---gGCGGacgGUuCGCACGCGguGCGc -3'
miRNA:   3'- cuugCGCCga-UAuGCGUGCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 64152 0.71 0.859509
Target:  5'- aAACGCuGGCUGauaaGCGCACacaauggGCGGAACGa -3'
miRNA:   3'- cUUGCG-CCGAUa---UGCGUG-------CGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 67546 0.71 0.868139
Target:  5'- cGAgGCGGCacaaACGCGCGCcGAGCGg -3'
miRNA:   3'- cUUgCGCCGaua-UGCGUGCGcUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.