miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 3' -51.4 NC_005137.2 + 758 0.66 0.987979
Target:  5'- cGGugGCGGCggcacguUugGCGgCG-GAGGCGg -3'
miRNA:   3'- -CUugCGCCGau-----AugCGU-GCgCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 6609 0.67 0.978208
Target:  5'- --cUGCGcGCUGaaacgACGCGCGCGcAGCa -3'
miRNA:   3'- cuuGCGC-CGAUa----UGCGUGCGCuUUGc -5'
22868 3' -51.4 NC_005137.2 + 8745 0.69 0.938224
Target:  5'- -uACGCGGUUcguCGgGCGgCGAGACGg -3'
miRNA:   3'- cuUGCGCCGAuauGCgUGC-GCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 11299 0.75 0.689616
Target:  5'- -uGCGCGGCgggAUGCGUACGUGcuAAGCu -3'
miRNA:   3'- cuUGCGCCGa--UAUGCGUGCGC--UUUGc -5'
22868 3' -51.4 NC_005137.2 + 12954 0.66 0.987979
Target:  5'- --gUGCGGUUuguggccaagaaAUGCGCACGUG-GGCGu -3'
miRNA:   3'- cuuGCGCCGA------------UAUGCGUGCGCuUUGC- -5'
22868 3' -51.4 NC_005137.2 + 12959 0.68 0.963536
Target:  5'- cGGCGCGGCcacaaacgGUugGCACGCa----- -3'
miRNA:   3'- cUUGCGCCGa-------UAugCGUGCGcuuugc -5'
22868 3' -51.4 NC_005137.2 + 16897 0.7 0.890245
Target:  5'- cGGAaGCGGUgcagACGCACGCGGcgcucGGCGa -3'
miRNA:   3'- -CUUgCGCCGaua-UGCGUGCGCU-----UUGC- -5'
22868 3' -51.4 NC_005137.2 + 17312 0.66 0.986365
Target:  5'- uGACGC-GCUGUgcgACGUGCGCGucGCa -3'
miRNA:   3'- cUUGCGcCGAUA---UGCGUGCGCuuUGc -5'
22868 3' -51.4 NC_005137.2 + 18421 0.66 0.984591
Target:  5'- uGAACgGCGGCUGcucuuuuCGCugGUGGGAa- -3'
miRNA:   3'- -CUUG-CGCCGAUau-----GCGugCGCUUUgc -5'
22868 3' -51.4 NC_005137.2 + 18836 0.71 0.852248
Target:  5'- -uACGCcgcagaGGCUGUACGCGuugugggGCGAAACGg -3'
miRNA:   3'- cuUGCG------CCGAUAUGCGUg------CGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 20336 0.69 0.927218
Target:  5'- aGAACGUGG-UGUAC-CACGCGGAcauuuagGCGa -3'
miRNA:   3'- -CUUGCGCCgAUAUGcGUGCGCUU-------UGC- -5'
22868 3' -51.4 NC_005137.2 + 20835 0.67 0.96691
Target:  5'- -uGCcCGGCuUGUugGUguGCGCGAAACa -3'
miRNA:   3'- cuUGcGCCG-AUAugCG--UGCGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 22412 0.66 0.987979
Target:  5'- uGGCGCGcCUG-ACGC-UGCGGAGCGu -3'
miRNA:   3'- cUUGCGCcGAUaUGCGuGCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 22888 0.68 0.959929
Target:  5'- gGGAUGCGGUgcUGCGaucgGCGCGcAACGc -3'
miRNA:   3'- -CUUGCGCCGauAUGCg---UGCGCuUUGC- -5'
22868 3' -51.4 NC_005137.2 + 26511 0.67 0.977477
Target:  5'- uGACGCGGCcgaugacuuaaaagUGUG-GCGCGCGu-ACGg -3'
miRNA:   3'- cUUGCGCCG--------------AUAUgCGUGCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 26594 0.66 0.987979
Target:  5'- -cACGCGGCUugaGUGCGaCAa-CGAGACc -3'
miRNA:   3'- cuUGCGCCGA---UAUGC-GUgcGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 28044 0.79 0.433366
Target:  5'- cGAACGUGGCgcgACGCGCGCuGGGAUGc -3'
miRNA:   3'- -CUUGCGCCGauaUGCGUGCG-CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 30381 0.72 0.835497
Target:  5'- uAAUGCGuGcCUGUGCGCACGCGuuuACc -3'
miRNA:   3'- cUUGCGC-C-GAUAUGCGUGCGCuu-UGc -5'
22868 3' -51.4 NC_005137.2 + 31013 0.69 0.931545
Target:  5'- uGGugGCGGUUgGUGCGUGCGCugcuggcgcacgaaGAGGCGc -3'
miRNA:   3'- -CUugCGCCGA-UAUGCGUGCG--------------CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 31624 0.7 0.890245
Target:  5'- uAugGCGGCcaacggucagUGcACGCGCGCGGAcGCGa -3'
miRNA:   3'- cUugCGCCG----------AUaUGCGUGCGCUU-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.