Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22868 | 3' | -51.4 | NC_005137.2 | + | 99274 | 1.1 | 0.00642 |
Target: 5'- uGAACGCGGCUAUACGCACGCGAAACGa -3' miRNA: 3'- -CUUGCGCCGAUAUGCGUGCGCUUUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 28044 | 0.79 | 0.433366 |
Target: 5'- cGAACGUGGCgcgACGCGCGCuGGGAUGc -3' miRNA: 3'- -CUUGCGCCGauaUGCGUGCG-CUUUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 69897 | 0.78 | 0.500127 |
Target: 5'- cGAACGCGGCguugGUGCGCguuuuuuACGCGgcGCa -3' miRNA: 3'- -CUUGCGCCGa---UAUGCG-------UGCGCuuUGc -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 11299 | 0.75 | 0.689616 |
Target: 5'- -uGCGCGGCgggAUGCGUACGUGcuAAGCu -3' miRNA: 3'- cuUGCGCCGa--UAUGCGUGCGC--UUUGc -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 35098 | 0.74 | 0.700083 |
Target: 5'- -cACGCGGCUGUuugGCGCaaACGCGGucAACa -3' miRNA: 3'- cuUGCGCCGAUA---UGCG--UGCGCU--UUGc -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 34585 | 0.73 | 0.761234 |
Target: 5'- cAACGCGGCgg-GCGCgucgccGCGCGGguAGCGg -3' miRNA: 3'- cUUGCGCCGauaUGCG------UGCGCU--UUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 48778 | 0.73 | 0.78074 |
Target: 5'- uGGACGCGGCgc--CGCACaGCGuguGCGg -3' miRNA: 3'- -CUUGCGCCGauauGCGUG-CGCuu-UGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 42763 | 0.72 | 0.799671 |
Target: 5'- cAGCGUGGCUAUcACGU-UGCGAGGCa -3' miRNA: 3'- cUUGCGCCGAUA-UGCGuGCGCUUUGc -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 73560 | 0.72 | 0.808896 |
Target: 5'- -uGCGCGGCguccaccgAUuCGUACGCGAcGACGg -3' miRNA: 3'- cuUGCGCCGa-------UAuGCGUGCGCU-UUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 30381 | 0.72 | 0.835497 |
Target: 5'- uAAUGCGuGcCUGUGCGCACGCGuuuACc -3' miRNA: 3'- cUUGCGC-C-GAUAUGCGUGCGCuu-UGc -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 18836 | 0.71 | 0.852248 |
Target: 5'- -uACGCcgcagaGGCUGUACGCGuugugggGCGAAACGg -3' miRNA: 3'- cuUGCG------CCGAUAUGCGUg------CGCUUUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 64152 | 0.71 | 0.859509 |
Target: 5'- aAACGCuGGCUGauaaGCGCACacaauggGCGGAACGa -3' miRNA: 3'- cUUGCG-CCGAUa---UGCGUG-------CGCUUUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 67546 | 0.71 | 0.868139 |
Target: 5'- cGAgGCGGCacaaACGCGCGCcGAGCGg -3' miRNA: 3'- cUUgCGCCGaua-UGCGUGCGcUUUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 35064 | 0.71 | 0.875745 |
Target: 5'- uAACGCGaGC-AUAUGCACGUuAAACGg -3' miRNA: 3'- cUUGCGC-CGaUAUGCGUGCGcUUUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 75586 | 0.71 | 0.875745 |
Target: 5'- cGGACGCgGGCg--GCGCcgugcGCGUGGAGCa -3' miRNA: 3'- -CUUGCG-CCGauaUGCG-----UGCGCUUUGc -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 31624 | 0.7 | 0.890245 |
Target: 5'- uAugGCGGCcaacggucagUGcACGCGCGCGGAcGCGa -3' miRNA: 3'- cUugCGCCG----------AUaUGCGUGCGCUU-UGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 16897 | 0.7 | 0.890245 |
Target: 5'- cGGAaGCGGUgcagACGCACGCGGcgcucGGCGa -3' miRNA: 3'- -CUUgCGCCGaua-UGCGUGCGCU-----UUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 35365 | 0.7 | 0.897131 |
Target: 5'- --cCGuCGGCgcacgGCGCACGCGGAaaaaACGa -3' miRNA: 3'- cuuGC-GCCGaua--UGCGUGCGCUU----UGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 101149 | 0.7 | 0.90048 |
Target: 5'- aAGCGCGGCguugagaaGCGCGCGAcccuuuuuuagcgcGGCGg -3' miRNA: 3'- cUUGCGCCGauaug---CGUGCGCU--------------UUGC- -5' |
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22868 | 3' | -51.4 | NC_005137.2 | + | 96421 | 0.7 | 0.903767 |
Target: 5'- -cGCGCGGCg--ACGCGCccgccGCGuuGCGu -3' miRNA: 3'- cuUGCGCCGauaUGCGUG-----CGCuuUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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