miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 3' -51.4 NC_005137.2 + 99274 1.1 0.00642
Target:  5'- uGAACGCGGCUAUACGCACGCGAAACGa -3'
miRNA:   3'- -CUUGCGCCGAUAUGCGUGCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 28044 0.79 0.433366
Target:  5'- cGAACGUGGCgcgACGCGCGCuGGGAUGc -3'
miRNA:   3'- -CUUGCGCCGauaUGCGUGCG-CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 69897 0.78 0.500127
Target:  5'- cGAACGCGGCguugGUGCGCguuuuuuACGCGgcGCa -3'
miRNA:   3'- -CUUGCGCCGa---UAUGCG-------UGCGCuuUGc -5'
22868 3' -51.4 NC_005137.2 + 11299 0.75 0.689616
Target:  5'- -uGCGCGGCgggAUGCGUACGUGcuAAGCu -3'
miRNA:   3'- cuUGCGCCGa--UAUGCGUGCGC--UUUGc -5'
22868 3' -51.4 NC_005137.2 + 35098 0.74 0.700083
Target:  5'- -cACGCGGCUGUuugGCGCaaACGCGGucAACa -3'
miRNA:   3'- cuUGCGCCGAUA---UGCG--UGCGCU--UUGc -5'
22868 3' -51.4 NC_005137.2 + 34585 0.73 0.761234
Target:  5'- cAACGCGGCgg-GCGCgucgccGCGCGGguAGCGg -3'
miRNA:   3'- cUUGCGCCGauaUGCG------UGCGCU--UUGC- -5'
22868 3' -51.4 NC_005137.2 + 48778 0.73 0.78074
Target:  5'- uGGACGCGGCgc--CGCACaGCGuguGCGg -3'
miRNA:   3'- -CUUGCGCCGauauGCGUG-CGCuu-UGC- -5'
22868 3' -51.4 NC_005137.2 + 42763 0.72 0.799671
Target:  5'- cAGCGUGGCUAUcACGU-UGCGAGGCa -3'
miRNA:   3'- cUUGCGCCGAUA-UGCGuGCGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 73560 0.72 0.808896
Target:  5'- -uGCGCGGCguccaccgAUuCGUACGCGAcGACGg -3'
miRNA:   3'- cuUGCGCCGa-------UAuGCGUGCGCU-UUGC- -5'
22868 3' -51.4 NC_005137.2 + 30381 0.72 0.835497
Target:  5'- uAAUGCGuGcCUGUGCGCACGCGuuuACc -3'
miRNA:   3'- cUUGCGC-C-GAUAUGCGUGCGCuu-UGc -5'
22868 3' -51.4 NC_005137.2 + 18836 0.71 0.852248
Target:  5'- -uACGCcgcagaGGCUGUACGCGuugugggGCGAAACGg -3'
miRNA:   3'- cuUGCG------CCGAUAUGCGUg------CGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 64152 0.71 0.859509
Target:  5'- aAACGCuGGCUGauaaGCGCACacaauggGCGGAACGa -3'
miRNA:   3'- cUUGCG-CCGAUa---UGCGUG-------CGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 67546 0.71 0.868139
Target:  5'- cGAgGCGGCacaaACGCGCGCcGAGCGg -3'
miRNA:   3'- cUUgCGCCGaua-UGCGUGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 35064 0.71 0.875745
Target:  5'- uAACGCGaGC-AUAUGCACGUuAAACGg -3'
miRNA:   3'- cUUGCGC-CGaUAUGCGUGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 75586 0.71 0.875745
Target:  5'- cGGACGCgGGCg--GCGCcgugcGCGUGGAGCa -3'
miRNA:   3'- -CUUGCG-CCGauaUGCG-----UGCGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 31624 0.7 0.890245
Target:  5'- uAugGCGGCcaacggucagUGcACGCGCGCGGAcGCGa -3'
miRNA:   3'- cUugCGCCG----------AUaUGCGUGCGCUU-UGC- -5'
22868 3' -51.4 NC_005137.2 + 16897 0.7 0.890245
Target:  5'- cGGAaGCGGUgcagACGCACGCGGcgcucGGCGa -3'
miRNA:   3'- -CUUgCGCCGaua-UGCGUGCGCU-----UUGC- -5'
22868 3' -51.4 NC_005137.2 + 35365 0.7 0.897131
Target:  5'- --cCGuCGGCgcacgGCGCACGCGGAaaaaACGa -3'
miRNA:   3'- cuuGC-GCCGaua--UGCGUGCGCUU----UGC- -5'
22868 3' -51.4 NC_005137.2 + 101149 0.7 0.90048
Target:  5'- aAGCGCGGCguugagaaGCGCGCGAcccuuuuuuagcgcGGCGg -3'
miRNA:   3'- cUUGCGCCGauaug---CGUGCGCU--------------UUGC- -5'
22868 3' -51.4 NC_005137.2 + 96421 0.7 0.903767
Target:  5'- -cGCGCGGCg--ACGCGCccgccGCGuuGCGu -3'
miRNA:   3'- cuUGCGCCGauaUGCGUG-----CGCuuUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.