miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 3' -51.4 NC_005137.2 + 12954 0.66 0.987979
Target:  5'- --gUGCGGUUuguggccaagaaAUGCGCACGUG-GGCGu -3'
miRNA:   3'- cuuGCGCCGA------------UAUGCGUGCGCuUUGC- -5'
22868 3' -51.4 NC_005137.2 + 63921 0.66 0.987979
Target:  5'- ---gGCGGacgGUuCGCACGCGguGCGc -3'
miRNA:   3'- cuugCGCCga-UAuGCGUGCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 22412 0.66 0.987979
Target:  5'- uGGCGCGcCUG-ACGC-UGCGGAGCGu -3'
miRNA:   3'- cUUGCGCcGAUaUGCGuGCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 758 0.66 0.987979
Target:  5'- cGGugGCGGCggcacguUugGCGgCG-GAGGCGg -3'
miRNA:   3'- -CUugCGCCGau-----AugCGU-GCgCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 26594 0.66 0.987979
Target:  5'- -cACGCGGCUugaGUGCGaCAa-CGAGACc -3'
miRNA:   3'- cuUGCGCCGA---UAUGC-GUgcGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 112865 0.66 0.987979
Target:  5'- --cUGCGGCUcgguccaaGUGauaGCACGCGGGcuGCGc -3'
miRNA:   3'- cuuGCGCCGA--------UAUg--CGUGCGCUU--UGC- -5'
22868 3' -51.4 NC_005137.2 + 120288 0.66 0.987824
Target:  5'- cGACGCGuGCgcgAUGCgguGCACGCcaucgaacgccacGAAACGg -3'
miRNA:   3'- cUUGCGC-CGa--UAUG---CGUGCG-------------CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 108546 0.66 0.986365
Target:  5'- uGAGCGCGGUgca--GC-CGaCGGAGCGc -3'
miRNA:   3'- -CUUGCGCCGauaugCGuGC-GCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 17312 0.66 0.986365
Target:  5'- uGACGC-GCUGUgcgACGUGCGCGucGCa -3'
miRNA:   3'- cUUGCGcCGAUA---UGCGUGCGCuuUGc -5'
22868 3' -51.4 NC_005137.2 + 88023 0.66 0.986024
Target:  5'- cGGCGCGGCcaccgccgagGCGggccacCACGUGGGACGg -3'
miRNA:   3'- cUUGCGCCGaua-------UGC------GUGCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 18421 0.66 0.984591
Target:  5'- uGAACgGCGGCUGcucuuuuCGCugGUGGGAa- -3'
miRNA:   3'- -CUUG-CGCCGAUau-----GCGugCGCUUUgc -5'
22868 3' -51.4 NC_005137.2 + 95766 0.66 0.982646
Target:  5'- cAGCG-GGCgu--CGCACGuCGGGACGu -3'
miRNA:   3'- cUUGCgCCGauauGCGUGC-GCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 57234 0.66 0.980521
Target:  5'- cGAACGaGGCUAcGCcCGCGCcAAACGa -3'
miRNA:   3'- -CUUGCgCCGAUaUGcGUGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 6609 0.67 0.978208
Target:  5'- --cUGCGcGCUGaaacgACGCGCGCGcAGCa -3'
miRNA:   3'- cuuGCGC-CGAUa----UGCGUGCGCuUUGc -5'
22868 3' -51.4 NC_005137.2 + 97992 0.67 0.978208
Target:  5'- -cGCGCGGCguggGUGCGCcCGCcAAGUGg -3'
miRNA:   3'- cuUGCGCCGa---UAUGCGuGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 97469 0.67 0.978208
Target:  5'- aGugGCGGCgugACGCuCGCGcAggUGg -3'
miRNA:   3'- cUugCGCCGauaUGCGuGCGC-UuuGC- -5'
22868 3' -51.4 NC_005137.2 + 122617 0.67 0.978208
Target:  5'- -uGCGUGGCacaucguUACuGCGCGUGAuGCGg -3'
miRNA:   3'- cuUGCGCCGau-----AUG-CGUGCGCUuUGC- -5'
22868 3' -51.4 NC_005137.2 + 26511 0.67 0.977477
Target:  5'- uGACGCGGCcgaugacuuaaaagUGUG-GCGCGCGu-ACGg -3'
miRNA:   3'- cUUGCGCCG--------------AUAUgCGUGCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 78774 0.67 0.975699
Target:  5'- aGAGCuucuGCGGCgacgagUAUACGUGCcguuuGCGGAGCGg -3'
miRNA:   3'- -CUUG----CGCCG------AUAUGCGUG-----CGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 80923 0.67 0.975699
Target:  5'- -uGCGCGGCcguggAgGCGCGCGucAAUGg -3'
miRNA:   3'- cuUGCGCCGaua--UgCGUGCGCu-UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.