miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 3' -51.4 NC_005137.2 + 84284 0.67 0.972985
Target:  5'- ---gGUGGUg--GCGCGCGUgGAAACGg -3'
miRNA:   3'- cuugCGCCGauaUGCGUGCG-CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 95510 0.67 0.972985
Target:  5'- aGACGUGGUgGUGCuggGCACGCGcaaaaugccguuGAGCGa -3'
miRNA:   3'- cUUGCGCCGaUAUG---CGUGCGC------------UUUGC- -5'
22868 3' -51.4 NC_005137.2 + 97646 0.67 0.972985
Target:  5'- uGAAUGCGGCUcUGCGCuuGCa----- -3'
miRNA:   3'- -CUUGCGCCGAuAUGCGugCGcuuugc -5'
22868 3' -51.4 NC_005137.2 + 63639 0.67 0.972985
Target:  5'- --cCGCGGCgacgGUcGCGCAuCGCGucGCGc -3'
miRNA:   3'- cuuGCGCCGa---UA-UGCGU-GCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 108627 0.67 0.972985
Target:  5'- uGGugGCGGUgacgGUGC-CACGCGAc--- -3'
miRNA:   3'- -CUugCGCCGa---UAUGcGUGCGCUuugc -5'
22868 3' -51.4 NC_005137.2 + 61038 0.67 0.970057
Target:  5'- -uGCGCGGCggucuUGUAauCGUACGCGuuuGCGc -3'
miRNA:   3'- cuUGCGCCG-----AUAU--GCGUGCGCuu-UGC- -5'
22868 3' -51.4 NC_005137.2 + 76269 0.67 0.96691
Target:  5'- ---gGCGGUUGUGCGCGCcaaCGAuuCGu -3'
miRNA:   3'- cuugCGCCGAUAUGCGUGc--GCUuuGC- -5'
22868 3' -51.4 NC_005137.2 + 20835 0.67 0.96691
Target:  5'- -uGCcCGGCuUGUugGUguGCGCGAAACa -3'
miRNA:   3'- cuUGcGCCG-AUAugCG--UGCGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 34918 0.68 0.963884
Target:  5'- -uGCGCGGUUAUucuuaaaacaaauuGCGCACGagccgaguguucaaGAAACGc -3'
miRNA:   3'- cuUGCGCCGAUA--------------UGCGUGCg-------------CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 128534 0.68 0.963536
Target:  5'- -cACGCGGCgcAUAaauaGCGCGCGAu--- -3'
miRNA:   3'- cuUGCGCCGa-UAUg---CGUGCGCUuugc -5'
22868 3' -51.4 NC_005137.2 + 12959 0.68 0.963536
Target:  5'- cGGCGCGGCcacaaacgGUugGCACGCa----- -3'
miRNA:   3'- cUUGCGCCGa-------UAugCGUGCGcuuugc -5'
22868 3' -51.4 NC_005137.2 + 108150 0.68 0.959929
Target:  5'- cGGGCgGCGGCggcgucgGUAUGCGCGCGcccGCc -3'
miRNA:   3'- -CUUG-CGCCGa------UAUGCGUGCGCuu-UGc -5'
22868 3' -51.4 NC_005137.2 + 63338 0.68 0.959929
Target:  5'- -cACGCGcGCUGgaACGCACGCuuAACc -3'
miRNA:   3'- cuUGCGC-CGAUa-UGCGUGCGcuUUGc -5'
22868 3' -51.4 NC_005137.2 + 22888 0.68 0.959929
Target:  5'- gGGAUGCGGUgcUGCGaucgGCGCGcAACGc -3'
miRNA:   3'- -CUUGCGCCGauAUGCg---UGCGCuUUGC- -5'
22868 3' -51.4 NC_005137.2 + 75969 0.68 0.959929
Target:  5'- uGACGCGGCgc-GCGUugGUGc-ACGg -3'
miRNA:   3'- cUUGCGCCGauaUGCGugCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 91193 0.68 0.956083
Target:  5'- uGGCGCGGCguuugguUGCACGCGuguuGGCc -3'
miRNA:   3'- cUUGCGCCGauau---GCGUGCGCu---UUGc -5'
22868 3' -51.4 NC_005137.2 + 58642 0.68 0.956083
Target:  5'- -uGCGCGuguacaCUAgcgUGCACGCGGAGCGg -3'
miRNA:   3'- cuUGCGCc-----GAUau-GCGUGCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 124959 0.68 0.956083
Target:  5'- uGAACGCGGCgccgGUGaugggGCGCuGCGcuGCGu -3'
miRNA:   3'- -CUUGCGCCGa---UAUg----CGUG-CGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 67707 0.68 0.947656
Target:  5'- aGGGCGCGcGUUGUGC-C-CGCGAgcGACGg -3'
miRNA:   3'- -CUUGCGC-CGAUAUGcGuGCGCU--UUGC- -5'
22868 3' -51.4 NC_005137.2 + 100036 0.68 0.947656
Target:  5'- -cACGCGGUccgACGCGgCGCGcgGCGc -3'
miRNA:   3'- cuUGCGCCGauaUGCGU-GCGCuuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.