miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 3' -51.4 NC_005137.2 + 114258 0.69 0.943067
Target:  5'- cGGACuuGGCggguCGCACGgGGAACGu -3'
miRNA:   3'- -CUUGcgCCGauauGCGUGCgCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 42067 0.69 0.943067
Target:  5'- uGGCGCgGGCgaaACGCGCGUGuuuAGCGu -3'
miRNA:   3'- cUUGCG-CCGauaUGCGUGCGCu--UUGC- -5'
22868 3' -51.4 NC_005137.2 + 8745 0.69 0.938224
Target:  5'- -uACGCGGUUcguCGgGCGgCGAGACGg -3'
miRNA:   3'- cuUGCGCCGAuauGCgUGC-GCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 31013 0.69 0.931545
Target:  5'- uGGugGCGGUUgGUGCGUGCGCugcuggcgcacgaaGAGGCGc -3'
miRNA:   3'- -CUugCGCCGA-UAUGCGUGCG--------------CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 32192 0.69 0.927768
Target:  5'- aAACGCGGUcg-GCGCACgGCGGcguuuggcaGACGa -3'
miRNA:   3'- cUUGCGCCGauaUGCGUG-CGCU---------UUGC- -5'
22868 3' -51.4 NC_005137.2 + 31690 0.69 0.927768
Target:  5'- -cGCGUGGUUGUGCGguCGCaccGACGu -3'
miRNA:   3'- cuUGCGCCGAUAUGCguGCGcu-UUGC- -5'
22868 3' -51.4 NC_005137.2 + 20336 0.69 0.927218
Target:  5'- aGAACGUGG-UGUAC-CACGCGGAcauuuagGCGa -3'
miRNA:   3'- -CUUGCGCCgAUAUGcGUGCGCUU-------UGC- -5'
22868 3' -51.4 NC_005137.2 + 56341 0.7 0.91628
Target:  5'- aGAACGUGGUg--ACGCAgGUGAcGCu -3'
miRNA:   3'- -CUUGCGCCGauaUGCGUgCGCUuUGc -5'
22868 3' -51.4 NC_005137.2 + 107002 0.7 0.91628
Target:  5'- cAACGUGGUUGcgcaaacgcUGCGCA-GCGAAAUGa -3'
miRNA:   3'- cUUGCGCCGAU---------AUGCGUgCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 51698 0.7 0.910151
Target:  5'- --uUGCGGCaccguUGCGCGCGUcgGAAGCGc -3'
miRNA:   3'- cuuGCGCCGau---AUGCGUGCG--CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 96421 0.7 0.903767
Target:  5'- -cGCGCGGCg--ACGCGCccgccGCGuuGCGu -3'
miRNA:   3'- cuUGCGCCGauaUGCGUG-----CGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 110037 0.7 0.903767
Target:  5'- aAGCGCGGCaaaACGCGCGcCGcAGGCa -3'
miRNA:   3'- cUUGCGCCGauaUGCGUGC-GC-UUUGc -5'
22868 3' -51.4 NC_005137.2 + 101149 0.7 0.90048
Target:  5'- aAGCGCGGCguugagaaGCGCGCGAcccuuuuuuagcgcGGCGg -3'
miRNA:   3'- cUUGCGCCGauaug---CGUGCGCU--------------UUGC- -5'
22868 3' -51.4 NC_005137.2 + 35365 0.7 0.897131
Target:  5'- --cCGuCGGCgcacgGCGCACGCGGAaaaaACGa -3'
miRNA:   3'- cuuGC-GCCGaua--UGCGUGCGCUU----UGC- -5'
22868 3' -51.4 NC_005137.2 + 31624 0.7 0.890245
Target:  5'- uAugGCGGCcaacggucagUGcACGCGCGCGGAcGCGa -3'
miRNA:   3'- cUugCGCCG----------AUaUGCGUGCGCUU-UGC- -5'
22868 3' -51.4 NC_005137.2 + 16897 0.7 0.890245
Target:  5'- cGGAaGCGGUgcagACGCACGCGGcgcucGGCGa -3'
miRNA:   3'- -CUUgCGCCGaua-UGCGUGCGCU-----UUGC- -5'
22868 3' -51.4 NC_005137.2 + 75586 0.71 0.875745
Target:  5'- cGGACGCgGGCg--GCGCcgugcGCGUGGAGCa -3'
miRNA:   3'- -CUUGCG-CCGauaUGCG-----UGCGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 35064 0.71 0.875745
Target:  5'- uAACGCGaGC-AUAUGCACGUuAAACGg -3'
miRNA:   3'- cUUGCGC-CGaUAUGCGUGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 67546 0.71 0.868139
Target:  5'- cGAgGCGGCacaaACGCGCGCcGAGCGg -3'
miRNA:   3'- cUUgCGCCGaua-UGCGUGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 64152 0.71 0.859509
Target:  5'- aAACGCuGGCUGauaaGCGCACacaauggGCGGAACGa -3'
miRNA:   3'- cUUGCG-CCGAUa---UGCGUG-------CGCUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.