miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 3' -51.4 NC_005137.2 + 61038 0.67 0.970057
Target:  5'- -uGCGCGGCggucuUGUAauCGUACGCGuuuGCGc -3'
miRNA:   3'- cuUGCGCCG-----AUAU--GCGUGCGCuu-UGC- -5'
22868 3' -51.4 NC_005137.2 + 32192 0.69 0.927768
Target:  5'- aAACGCGGUcg-GCGCACgGCGGcguuuggcaGACGa -3'
miRNA:   3'- cUUGCGCCGauaUGCGUG-CGCU---------UUGC- -5'
22868 3' -51.4 NC_005137.2 + 114258 0.69 0.943067
Target:  5'- cGGACuuGGCggguCGCACGgGGAACGu -3'
miRNA:   3'- -CUUGcgCCGauauGCGUGCgCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 100036 0.68 0.947656
Target:  5'- -cACGCGGUccgACGCGgCGCGcgGCGc -3'
miRNA:   3'- cuUGCGCCGauaUGCGU-GCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 124959 0.68 0.956083
Target:  5'- uGAACGCGGCgccgGUGaugggGCGCuGCGcuGCGu -3'
miRNA:   3'- -CUUGCGCCGa---UAUg----CGUG-CGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 75969 0.68 0.959929
Target:  5'- uGACGCGGCgc-GCGUugGUGc-ACGg -3'
miRNA:   3'- cUUGCGCCGauaUGCGugCGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 108150 0.68 0.959929
Target:  5'- cGGGCgGCGGCggcgucgGUAUGCGCGCGcccGCc -3'
miRNA:   3'- -CUUG-CGCCGa------UAUGCGUGCGCuu-UGc -5'
22868 3' -51.4 NC_005137.2 + 34918 0.68 0.963884
Target:  5'- -uGCGCGGUUAUucuuaaaacaaauuGCGCACGagccgaguguucaaGAAACGc -3'
miRNA:   3'- cuUGCGCCGAUA--------------UGCGUGCg-------------CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 20835 0.67 0.96691
Target:  5'- -uGCcCGGCuUGUugGUguGCGCGAAACa -3'
miRNA:   3'- cuUGcGCCG-AUAugCG--UGCGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 31690 0.69 0.927768
Target:  5'- -cGCGUGGUUGUGCGguCGCaccGACGu -3'
miRNA:   3'- cuUGCGCCGAUAUGCguGCGcu-UUGC- -5'
22868 3' -51.4 NC_005137.2 + 20336 0.69 0.927218
Target:  5'- aGAACGUGG-UGUAC-CACGCGGAcauuuagGCGa -3'
miRNA:   3'- -CUUGCGCCgAUAUGcGUGCGCUU-------UGC- -5'
22868 3' -51.4 NC_005137.2 + 107002 0.7 0.91628
Target:  5'- cAACGUGGUUGcgcaaacgcUGCGCA-GCGAAAUGa -3'
miRNA:   3'- cUUGCGCCGAU---------AUGCGUgCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 35098 0.74 0.700083
Target:  5'- -cACGCGGCUGUuugGCGCaaACGCGGucAACa -3'
miRNA:   3'- cuUGCGCCGAUA---UGCG--UGCGCU--UUGc -5'
22868 3' -51.4 NC_005137.2 + 48778 0.73 0.78074
Target:  5'- uGGACGCGGCgc--CGCACaGCGuguGCGg -3'
miRNA:   3'- -CUUGCGCCGauauGCGUG-CGCuu-UGC- -5'
22868 3' -51.4 NC_005137.2 + 30381 0.72 0.835497
Target:  5'- uAAUGCGuGcCUGUGCGCACGCGuuuACc -3'
miRNA:   3'- cUUGCGC-C-GAUAUGCGUGCGCuu-UGc -5'
22868 3' -51.4 NC_005137.2 + 18836 0.71 0.852248
Target:  5'- -uACGCcgcagaGGCUGUACGCGuugugggGCGAAACGg -3'
miRNA:   3'- cuUGCG------CCGAUAUGCGUg------CGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 67546 0.71 0.868139
Target:  5'- cGAgGCGGCacaaACGCGCGCcGAGCGg -3'
miRNA:   3'- cUUgCGCCGaua-UGCGUGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 31624 0.7 0.890245
Target:  5'- uAugGCGGCcaacggucagUGcACGCGCGCGGAcGCGa -3'
miRNA:   3'- cUugCGCCG----------AUaUGCGUGCGCUU-UGC- -5'
22868 3' -51.4 NC_005137.2 + 96421 0.7 0.903767
Target:  5'- -cGCGCGGCg--ACGCGCccgccGCGuuGCGu -3'
miRNA:   3'- cuUGCGCCGauaUGCGUG-----CGCuuUGC- -5'
22868 3' -51.4 NC_005137.2 + 51698 0.7 0.910151
Target:  5'- --uUGCGGCaccguUGCGCGCGUcgGAAGCGc -3'
miRNA:   3'- cuuGCGCCGau---AUGCGUGCG--CUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.