miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 3' -51.4 NC_005137.2 + 758 0.66 0.987979
Target:  5'- cGGugGCGGCggcacguUugGCGgCG-GAGGCGg -3'
miRNA:   3'- -CUugCGCCGau-----AugCGU-GCgCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 67707 0.68 0.947656
Target:  5'- aGGGCGCGcGUUGUGC-C-CGCGAgcGACGg -3'
miRNA:   3'- -CUUGCGC-CGAUAUGcGuGCGCU--UUGC- -5'
22868 3' -51.4 NC_005137.2 + 42067 0.69 0.943067
Target:  5'- uGGCGCgGGCgaaACGCGCGUGuuuAGCGu -3'
miRNA:   3'- cUUGCG-CCGauaUGCGUGCGCu--UUGC- -5'
22868 3' -51.4 NC_005137.2 + 99274 1.1 0.00642
Target:  5'- uGAACGCGGCUAUACGCACGCGAAACGa -3'
miRNA:   3'- -CUUGCGCCGAUAUGCGUGCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 18421 0.66 0.984591
Target:  5'- uGAACgGCGGCUGcucuuuuCGCugGUGGGAa- -3'
miRNA:   3'- -CUUG-CGCCGAUau-----GCGugCGCUUUgc -5'
22868 3' -51.4 NC_005137.2 + 57234 0.66 0.980521
Target:  5'- cGAACGaGGCUAcGCcCGCGCcAAACGa -3'
miRNA:   3'- -CUUGCgCCGAUaUGcGUGCGcUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 80923 0.67 0.975699
Target:  5'- -uGCGCGGCcguggAgGCGCGCGucAAUGg -3'
miRNA:   3'- cuUGCGCCGaua--UgCGUGCGCu-UUGC- -5'
22868 3' -51.4 NC_005137.2 + 97646 0.67 0.972985
Target:  5'- uGAAUGCGGCUcUGCGCuuGCa----- -3'
miRNA:   3'- -CUUGCGCCGAuAUGCGugCGcuuugc -5'
22868 3' -51.4 NC_005137.2 + 76269 0.67 0.96691
Target:  5'- ---gGCGGUUGUGCGCGCcaaCGAuuCGu -3'
miRNA:   3'- cuugCGCCGAUAUGCGUGc--GCUuuGC- -5'
22868 3' -51.4 NC_005137.2 + 91193 0.68 0.956083
Target:  5'- uGGCGCGGCguuugguUGCACGCGuguuGGCc -3'
miRNA:   3'- cUUGCGCCGauau---GCGUGCGCu---UUGc -5'
22868 3' -51.4 NC_005137.2 + 128534 0.68 0.963536
Target:  5'- -cACGCGGCgcAUAaauaGCGCGCGAu--- -3'
miRNA:   3'- cuUGCGCCGa-UAUg---CGUGCGCUuugc -5'
22868 3' -51.4 NC_005137.2 + 84284 0.67 0.972985
Target:  5'- ---gGUGGUg--GCGCGCGUgGAAACGg -3'
miRNA:   3'- cuugCGCCGauaUGCGUGCG-CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 26594 0.66 0.987979
Target:  5'- -cACGCGGCUugaGUGCGaCAa-CGAGACc -3'
miRNA:   3'- cuUGCGCCGA---UAUGC-GUgcGCUUUGc -5'
22868 3' -51.4 NC_005137.2 + 63338 0.68 0.959929
Target:  5'- -cACGCGcGCUGgaACGCACGCuuAACc -3'
miRNA:   3'- cuUGCGC-CGAUa-UGCGUGCGcuUUGc -5'
22868 3' -51.4 NC_005137.2 + 120288 0.66 0.987824
Target:  5'- cGACGCGuGCgcgAUGCgguGCACGCcaucgaacgccacGAAACGg -3'
miRNA:   3'- cUUGCGC-CGa--UAUG---CGUGCG-------------CUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 95510 0.67 0.972985
Target:  5'- aGACGUGGUgGUGCuggGCACGCGcaaaaugccguuGAGCGa -3'
miRNA:   3'- cUUGCGCCGaUAUG---CGUGCGC------------UUUGC- -5'
22868 3' -51.4 NC_005137.2 + 22888 0.68 0.959929
Target:  5'- gGGAUGCGGUgcUGCGaucgGCGCGcAACGc -3'
miRNA:   3'- -CUUGCGCCGauAUGCg---UGCGCuUUGC- -5'
22868 3' -51.4 NC_005137.2 + 58642 0.68 0.956083
Target:  5'- -uGCGCGuguacaCUAgcgUGCACGCGGAGCGg -3'
miRNA:   3'- cuUGCGCc-----GAUau-GCGUGCGCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 108546 0.66 0.986365
Target:  5'- uGAGCGCGGUgca--GC-CGaCGGAGCGc -3'
miRNA:   3'- -CUUGCGCCGauaugCGuGC-GCUUUGC- -5'
22868 3' -51.4 NC_005137.2 + 6609 0.67 0.978208
Target:  5'- --cUGCGcGCUGaaacgACGCGCGCGcAGCa -3'
miRNA:   3'- cuuGCGC-CGAUa----UGCGUGCGCuUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.