miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 5' -56.1 NC_005137.2 + 19607 0.66 0.894527
Target:  5'- aACACa--GGgGCGGCCGCuGCGGCCu -3'
miRNA:   3'- gUGUGcagCCaCGCUGGCG-UGUUGGu -5'
22868 5' -56.1 NC_005137.2 + 12696 0.66 0.894527
Target:  5'- aGCGCGUCGGaaCGGCgCGC-CAACa- -3'
miRNA:   3'- gUGUGCAGCCacGCUG-GCGuGUUGgu -5'
22868 5' -56.1 NC_005137.2 + 98027 0.66 0.887778
Target:  5'- uGCACGUCGG-GCG-CUGCgaGCGgguCCAg -3'
miRNA:   3'- gUGUGCAGCCaCGCuGGCG--UGUu--GGU- -5'
22868 5' -56.1 NC_005137.2 + 7245 0.66 0.883619
Target:  5'- aACGUGUUGGUggcaacguugaccucGCGACCuaACAACCGg -3'
miRNA:   3'- gUGUGCAGCCA---------------CGCUGGcgUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 31130 0.66 0.880801
Target:  5'- gAUGCGUCGGUGUacgaguuuGACgG-ACAGCCGg -3'
miRNA:   3'- gUGUGCAGCCACG--------CUGgCgUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 33728 0.66 0.880091
Target:  5'- aACACGUUGGcuacugcgGCGGCguuguaccgaaaaCGCAUGGCCAu -3'
miRNA:   3'- gUGUGCAGCCa-------CGCUG-------------GCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 112527 0.66 0.873601
Target:  5'- cUugACGUCGGcaCaGCCGCGCAcuauGCCAa -3'
miRNA:   3'- -GugUGCAGCCacGcUGGCGUGU----UGGU- -5'
22868 5' -56.1 NC_005137.2 + 93641 0.66 0.873601
Target:  5'- aCGCAUGUUuGUGCGAcgacgaaaucuCCGC-CGGCCGc -3'
miRNA:   3'- -GUGUGCAGcCACGCU-----------GGCGuGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 68755 0.66 0.866182
Target:  5'- aACGCGUUGGUGCcGCUugugugGCGCGaaaACCGu -3'
miRNA:   3'- gUGUGCAGCCACGcUGG------CGUGU---UGGU- -5'
22868 5' -56.1 NC_005137.2 + 93460 0.67 0.850713
Target:  5'- gCAUACGggcaCGGUGCGcGCCaGCGCcguuuGCCGa -3'
miRNA:   3'- -GUGUGCa---GCCACGC-UGG-CGUGu----UGGU- -5'
22868 5' -56.1 NC_005137.2 + 95899 0.67 0.850713
Target:  5'- --uGCGUCGcG-GUGACCGUACcguuGCCAa -3'
miRNA:   3'- gugUGCAGC-CaCGCUGGCGUGu---UGGU- -5'
22868 5' -56.1 NC_005137.2 + 119839 0.67 0.850713
Target:  5'- gACuuCGUUGGgaucgggcgugGUGGCaCGCGCAGCCAa -3'
miRNA:   3'- gUGu-GCAGCCa----------CGCUG-GCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 129331 0.67 0.850713
Target:  5'- uGCGCG-CGuUGCuGACCGCGCcgaAACCGa -3'
miRNA:   3'- gUGUGCaGCcACG-CUGGCGUG---UUGGU- -5'
22868 5' -56.1 NC_005137.2 + 107971 0.67 0.842675
Target:  5'- uGCGCGaUCGGUcGCGuugacGCgCGCGCAGCUu -3'
miRNA:   3'- gUGUGC-AGCCA-CGC-----UG-GCGUGUUGGu -5'
22868 5' -56.1 NC_005137.2 + 109406 0.67 0.831098
Target:  5'- aCAC-CGUCGGgcucgucaaaaccGCGGCCuauGCGCGGCCc -3'
miRNA:   3'- -GUGuGCAGCCa------------CGCUGG---CGUGUUGGu -5'
22868 5' -56.1 NC_005137.2 + 22460 0.68 0.808665
Target:  5'- gCGCucCGUCGGcUGC-ACCGCGCucacGCCGg -3'
miRNA:   3'- -GUGu-GCAGCC-ACGcUGGCGUGu---UGGU- -5'
22868 5' -56.1 NC_005137.2 + 31725 0.68 0.808665
Target:  5'- -uCGCGUCGuuucGCGugCGUAUAGCCGc -3'
miRNA:   3'- guGUGCAGCca--CGCugGCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 20375 0.68 0.808665
Target:  5'- aCGC-CGUCGGcGCGuuugUGCACGGCCGu -3'
miRNA:   3'- -GUGuGCAGCCaCGCug--GCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 102272 0.68 0.799738
Target:  5'- gACGCGUac--GCGACCGCAauaguCAACCAc -3'
miRNA:   3'- gUGUGCAgccaCGCUGGCGU-----GUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 129504 0.68 0.799738
Target:  5'- aACGCGUCG--GCG-CCGCGCGGCgGa -3'
miRNA:   3'- gUGUGCAGCcaCGCuGGCGUGUUGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.