miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 5' -56.1 NC_005137.2 + 7245 0.66 0.883619
Target:  5'- aACGUGUUGGUggcaacguugaccucGCGACCuaACAACCGg -3'
miRNA:   3'- gUGUGCAGCCA---------------CGCUGGcgUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 12696 0.66 0.894527
Target:  5'- aGCGCGUCGGaaCGGCgCGC-CAACa- -3'
miRNA:   3'- gUGUGCAGCCacGCUG-GCGuGUUGgu -5'
22868 5' -56.1 NC_005137.2 + 18310 0.69 0.743274
Target:  5'- -cCGCG-CGGgcaucGCGACUGCACGgacGCCAa -3'
miRNA:   3'- guGUGCaGCCa----CGCUGGCGUGU---UGGU- -5'
22868 5' -56.1 NC_005137.2 + 18610 0.73 0.491283
Target:  5'- gGCGCGcCGuGcGCGAUCGCGCAAUCAa -3'
miRNA:   3'- gUGUGCaGC-CaCGCUGGCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 19607 0.66 0.894527
Target:  5'- aACACa--GGgGCGGCCGCuGCGGCCu -3'
miRNA:   3'- gUGUGcagCCaCGCUGGCG-UGUUGGu -5'
22868 5' -56.1 NC_005137.2 + 20375 0.68 0.808665
Target:  5'- aCGC-CGUCGGcGCGuuugUGCACGGCCGu -3'
miRNA:   3'- -GUGuGCAGCCaCGCug--GCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 22460 0.68 0.808665
Target:  5'- gCGCucCGUCGGcUGC-ACCGCGCucacGCCGg -3'
miRNA:   3'- -GUGu-GCAGCC-ACGcUGGCGUGu---UGGU- -5'
22868 5' -56.1 NC_005137.2 + 31130 0.66 0.880801
Target:  5'- gAUGCGUCGGUGUacgaguuuGACgG-ACAGCCGg -3'
miRNA:   3'- gUGUGCAGCCACG--------CUGgCgUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 31725 0.68 0.808665
Target:  5'- -uCGCGUCGuuucGCGugCGUAUAGCCGc -3'
miRNA:   3'- guGUGCAGCca--CGCugGCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 33728 0.66 0.880091
Target:  5'- aACACGUUGGcuacugcgGCGGCguuguaccgaaaaCGCAUGGCCAu -3'
miRNA:   3'- gUGUGCAGCCa-------CGCUG-------------GCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 62269 0.68 0.799738
Target:  5'- aACGCGUUGGU-CGACgGCA--ACCAa -3'
miRNA:   3'- gUGUGCAGCCAcGCUGgCGUguUGGU- -5'
22868 5' -56.1 NC_005137.2 + 66471 0.68 0.789742
Target:  5'- gCGCACGUUGGUcaacguuGCcgGugCGCACAcGCCGu -3'
miRNA:   3'- -GUGUGCAGCCA-------CG--CugGCGUGU-UGGU- -5'
22868 5' -56.1 NC_005137.2 + 67338 0.74 0.444385
Target:  5'- aACGCGUCGGguucgGUGACCGCgggcGCGACgCGa -3'
miRNA:   3'- gUGUGCAGCCa----CGCUGGCG----UGUUG-GU- -5'
22868 5' -56.1 NC_005137.2 + 68755 0.66 0.866182
Target:  5'- aACGCGUUGGUGCcGCUugugugGCGCGaaaACCGu -3'
miRNA:   3'- gUGUGCAGCCACGcUGG------CGUGU---UGGU- -5'
22868 5' -56.1 NC_005137.2 + 72795 0.68 0.762587
Target:  5'- cCACGCGUUG--GCGGCgCGCGCuGCCGu -3'
miRNA:   3'- -GUGUGCAGCcaCGCUG-GCGUGuUGGU- -5'
22868 5' -56.1 NC_005137.2 + 75129 0.68 0.790658
Target:  5'- gGCGuCGUCGGcGCGAUUGUugGacGCCAa -3'
miRNA:   3'- gUGU-GCAGCCaCGCUGGCGugU--UGGU- -5'
22868 5' -56.1 NC_005137.2 + 75976 0.77 0.335402
Target:  5'- gCGCGCGUUGGUGC-ACgGCGCAcggGCCAu -3'
miRNA:   3'- -GUGUGCAGCCACGcUGgCGUGU---UGGU- -5'
22868 5' -56.1 NC_005137.2 + 93460 0.67 0.850713
Target:  5'- gCAUACGggcaCGGUGCGcGCCaGCGCcguuuGCCGa -3'
miRNA:   3'- -GUGUGCa---GCCACGC-UGG-CGUGu----UGGU- -5'
22868 5' -56.1 NC_005137.2 + 93641 0.66 0.873601
Target:  5'- aCGCAUGUUuGUGCGAcgacgaaaucuCCGC-CGGCCGc -3'
miRNA:   3'- -GUGUGCAGcCACGCU-----------GGCGuGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 95881 0.69 0.752984
Target:  5'- gGCGCGugucaaaccuUCGGUGuUGACCGCguuugcgccaaACAGCCGc -3'
miRNA:   3'- gUGUGC----------AGCCAC-GCUGGCG-----------UGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.