Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22868 | 5' | -56.1 | NC_005137.2 | + | 95899 | 0.67 | 0.850713 |
Target: 5'- --uGCGUCGcG-GUGACCGUACcguuGCCAa -3' miRNA: 3'- gugUGCAGC-CaCGCUGGCGUGu---UGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 97993 | 0.69 | 0.733465 |
Target: 5'- gCGCgGCGUgGGUGCGcCCGC-CAagugGCCAg -3' miRNA: 3'- -GUG-UGCAgCCACGCuGGCGuGU----UGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 98027 | 0.66 | 0.887778 |
Target: 5'- uGCACGUCGG-GCG-CUGCgaGCGgguCCAg -3' miRNA: 3'- gUGUGCAGCCaCGCuGGCG--UGUu--GGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 99311 | 1.08 | 0.003058 |
Target: 5'- gCACACGUCGGUGCGACCGCACAACCAc -3' miRNA: 3'- -GUGUGCAGCCACGCUGGCGUGUUGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 99947 | 0.72 | 0.580743 |
Target: 5'- aCGCAUGUUGGacaacggccGCGGCCGCGCGccucuucgugcGCCAg -3' miRNA: 3'- -GUGUGCAGCCa--------CGCUGGCGUGU-----------UGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 100614 | 0.68 | 0.772073 |
Target: 5'- aCAUACGU-GGUaaacGCGugCGCACAGgCAc -3' miRNA: 3'- -GUGUGCAgCCA----CGCugGCGUGUUgGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 102272 | 0.68 | 0.799738 |
Target: 5'- gACGCGUac--GCGACCGCAauaguCAACCAc -3' miRNA: 3'- gUGUGCAgccaCGCUGGCGU-----GUUGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 106695 | 0.69 | 0.713591 |
Target: 5'- uGCGCGgacgCGGUG-GACUGCAacaAGCCGu -3' miRNA: 3'- gUGUGCa---GCCACgCUGGCGUg--UUGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 107971 | 0.67 | 0.842675 |
Target: 5'- uGCGCGaUCGGUcGCGuugacGCgCGCGCAGCUu -3' miRNA: 3'- gUGUGC-AGCCA-CGC-----UG-GCGUGUUGGu -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 109406 | 0.67 | 0.831098 |
Target: 5'- aCAC-CGUCGGgcucgucaaaaccGCGGCCuauGCGCGGCCc -3' miRNA: 3'- -GUGuGCAGCCa------------CGCUGG---CGUGUUGGu -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 112527 | 0.66 | 0.873601 |
Target: 5'- cUugACGUCGGcaCaGCCGCGCAcuauGCCAa -3' miRNA: 3'- -GugUGCAGCCacGcUGGCGUGU----UGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 118103 | 0.7 | 0.662838 |
Target: 5'- gACGCGUgCGGUGCaacaagGugCGCACcguGACCGa -3' miRNA: 3'- gUGUGCA-GCCACG------CugGCGUG---UUGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 119839 | 0.67 | 0.850713 |
Target: 5'- gACuuCGUUGGgaucgggcgugGUGGCaCGCGCAGCCAa -3' miRNA: 3'- gUGu-GCAGCCa----------CGCUG-GCGUGUUGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 129331 | 0.67 | 0.850713 |
Target: 5'- uGCGCG-CGuUGCuGACCGCGCcgaAACCGa -3' miRNA: 3'- gUGUGCaGCcACG-CUGGCGUG---UUGGU- -5' |
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22868 | 5' | -56.1 | NC_005137.2 | + | 129504 | 0.68 | 0.799738 |
Target: 5'- aACGCGUCG--GCG-CCGCGCGGCgGa -3' miRNA: 3'- gUGUGCAGCcaCGCuGGCGUGUUGgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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