miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22868 5' -56.1 NC_005137.2 + 129504 0.68 0.799738
Target:  5'- aACGCGUCG--GCG-CCGCGCGGCgGa -3'
miRNA:   3'- gUGUGCAGCcaCGCuGGCGUGUUGgU- -5'
22868 5' -56.1 NC_005137.2 + 129331 0.67 0.850713
Target:  5'- uGCGCG-CGuUGCuGACCGCGCcgaAACCGa -3'
miRNA:   3'- gUGUGCaGCcACG-CUGGCGUG---UUGGU- -5'
22868 5' -56.1 NC_005137.2 + 119839 0.67 0.850713
Target:  5'- gACuuCGUUGGgaucgggcgugGUGGCaCGCGCAGCCAa -3'
miRNA:   3'- gUGu-GCAGCCa----------CGCUG-GCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 118103 0.7 0.662838
Target:  5'- gACGCGUgCGGUGCaacaagGugCGCACcguGACCGa -3'
miRNA:   3'- gUGUGCA-GCCACG------CugGCGUG---UUGGU- -5'
22868 5' -56.1 NC_005137.2 + 112527 0.66 0.873601
Target:  5'- cUugACGUCGGcaCaGCCGCGCAcuauGCCAa -3'
miRNA:   3'- -GugUGCAGCCacGcUGGCGUGU----UGGU- -5'
22868 5' -56.1 NC_005137.2 + 109406 0.67 0.831098
Target:  5'- aCAC-CGUCGGgcucgucaaaaccGCGGCCuauGCGCGGCCc -3'
miRNA:   3'- -GUGuGCAGCCa------------CGCUGG---CGUGUUGGu -5'
22868 5' -56.1 NC_005137.2 + 107971 0.67 0.842675
Target:  5'- uGCGCGaUCGGUcGCGuugacGCgCGCGCAGCUu -3'
miRNA:   3'- gUGUGC-AGCCA-CGC-----UG-GCGUGUUGGu -5'
22868 5' -56.1 NC_005137.2 + 106695 0.69 0.713591
Target:  5'- uGCGCGgacgCGGUG-GACUGCAacaAGCCGu -3'
miRNA:   3'- gUGUGCa---GCCACgCUGGCGUg--UUGGU- -5'
22868 5' -56.1 NC_005137.2 + 102272 0.68 0.799738
Target:  5'- gACGCGUac--GCGACCGCAauaguCAACCAc -3'
miRNA:   3'- gUGUGCAgccaCGCUGGCGU-----GUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 100614 0.68 0.772073
Target:  5'- aCAUACGU-GGUaaacGCGugCGCACAGgCAc -3'
miRNA:   3'- -GUGUGCAgCCA----CGCugGCGUGUUgGU- -5'
22868 5' -56.1 NC_005137.2 + 99947 0.72 0.580743
Target:  5'- aCGCAUGUUGGacaacggccGCGGCCGCGCGccucuucgugcGCCAg -3'
miRNA:   3'- -GUGUGCAGCCa--------CGCUGGCGUGU-----------UGGU- -5'
22868 5' -56.1 NC_005137.2 + 99311 1.08 0.003058
Target:  5'- gCACACGUCGGUGCGACCGCACAACCAc -3'
miRNA:   3'- -GUGUGCAGCCACGCUGGCGUGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 98027 0.66 0.887778
Target:  5'- uGCACGUCGG-GCG-CUGCgaGCGgguCCAg -3'
miRNA:   3'- gUGUGCAGCCaCGCuGGCG--UGUu--GGU- -5'
22868 5' -56.1 NC_005137.2 + 97993 0.69 0.733465
Target:  5'- gCGCgGCGUgGGUGCGcCCGC-CAagugGCCAg -3'
miRNA:   3'- -GUG-UGCAgCCACGCuGGCGuGU----UGGU- -5'
22868 5' -56.1 NC_005137.2 + 95899 0.67 0.850713
Target:  5'- --uGCGUCGcG-GUGACCGUACcguuGCCAa -3'
miRNA:   3'- gugUGCAGC-CaCGCUGGCGUGu---UGGU- -5'
22868 5' -56.1 NC_005137.2 + 95881 0.69 0.752984
Target:  5'- gGCGCGugucaaaccuUCGGUGuUGACCGCguuugcgccaaACAGCCGc -3'
miRNA:   3'- gUGUGC----------AGCCAC-GCUGGCG-----------UGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 93641 0.66 0.873601
Target:  5'- aCGCAUGUUuGUGCGAcgacgaaaucuCCGC-CGGCCGc -3'
miRNA:   3'- -GUGUGCAGcCACGCU-----------GGCGuGUUGGU- -5'
22868 5' -56.1 NC_005137.2 + 93460 0.67 0.850713
Target:  5'- gCAUACGggcaCGGUGCGcGCCaGCGCcguuuGCCGa -3'
miRNA:   3'- -GUGUGCa---GCCACGC-UGG-CGUGu----UGGU- -5'
22868 5' -56.1 NC_005137.2 + 75976 0.77 0.335402
Target:  5'- gCGCGCGUUGGUGC-ACgGCGCAcggGCCAu -3'
miRNA:   3'- -GUGUGCAGCCACGcUGgCGUGU---UGGU- -5'
22868 5' -56.1 NC_005137.2 + 75129 0.68 0.790658
Target:  5'- gGCGuCGUCGGcGCGAUUGUugGacGCCAa -3'
miRNA:   3'- gUGU-GCAGCCaCGCUGGCGugU--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.