miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22870 3' -49.5 NC_005137.2 + 3530 0.67 0.988008
Target:  5'- uGAACuGCugAGUGGCC--GGCACGUUg -3'
miRNA:   3'- -UUUGcUGugUCGUUGGuuUCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 8863 0.69 0.950105
Target:  5'- cAACGACACGGCAcaacuaCAAAGCAUa-- -3'
miRNA:   3'- uUUGCUGUGUCGUug----GUUUCGUGcag -5'
22870 3' -49.5 NC_005137.2 + 9500 0.67 0.986337
Target:  5'- cAACGGCGgGGCuGCCGccGCuuGUCa -3'
miRNA:   3'- uUUGCUGUgUCGuUGGUuuCGugCAG- -5'
22870 3' -49.5 NC_005137.2 + 9681 0.66 0.994037
Target:  5'- -uGCGACAuguacuguuccacCAGCAACCuguuGC-CGUCu -3'
miRNA:   3'- uuUGCUGU-------------GUCGUUGGuuu-CGuGCAG- -5'
22870 3' -49.5 NC_005137.2 + 11619 0.67 0.989372
Target:  5'- uGGACGACuggAUAGC-ACCGAgcucggcGGCGCGUUu -3'
miRNA:   3'- -UUUGCUG---UGUCGuUGGUU-------UCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 15863 0.66 0.993167
Target:  5'- uAAACGACAguGCcGCCGGu-CACGUg -3'
miRNA:   3'- -UUUGCUGUguCGuUGGUUucGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 16068 0.73 0.835102
Target:  5'- cAAACGACGCAGUuuaaAACUAaacaugauuuaGAGCACGUg -3'
miRNA:   3'- -UUUGCUGUGUCG----UUGGU-----------UUCGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 19070 0.66 0.992085
Target:  5'- aAAACGcucacCACGGCGGCCAAAGCu---- -3'
miRNA:   3'- -UUUGCu----GUGUCGUUGGUUUCGugcag -5'
22870 3' -49.5 NC_005137.2 + 21850 0.73 0.843889
Target:  5'- aGAAC-ACugGGCAACUuGAGCACGUa -3'
miRNA:   3'- -UUUGcUGugUCGUUGGuUUCGUGCAg -5'
22870 3' -49.5 NC_005137.2 + 22349 0.78 0.552203
Target:  5'- uGGCGACACaAGCAAUgGGuGCACGUCg -3'
miRNA:   3'- uUUGCUGUG-UCGUUGgUUuCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 27894 0.68 0.973502
Target:  5'- uGGCGGCGCcacgggucaucgcccGGCAACCAAuugcGCACG-Cg -3'
miRNA:   3'- uUUGCUGUG---------------UCGUUGGUUu---CGUGCaG- -5'
22870 3' -49.5 NC_005137.2 + 30155 0.68 0.972332
Target:  5'- --uUGACACGGCcGCUAAAGCaucuuACGUUu -3'
miRNA:   3'- uuuGCUGUGUCGuUGGUUUCG-----UGCAG- -5'
22870 3' -49.5 NC_005137.2 + 31220 0.68 0.977824
Target:  5'- cAGCGGuCGCGGCAcACCAGcuugaacauGGCcGCGUCg -3'
miRNA:   3'- uUUGCU-GUGUCGU-UGGUU---------UCG-UGCAG- -5'
22870 3' -49.5 NC_005137.2 + 31808 0.7 0.940612
Target:  5'- cAGCGAUGCGGCGGcCCAAuGcCGCGUUa -3'
miRNA:   3'- uUUGCUGUGUCGUU-GGUUuC-GUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 32889 0.71 0.912072
Target:  5'- cGACGACGCGGUAGCCGGcGGCG-GUg -3'
miRNA:   3'- uUUGCUGUGUCGUUGGUU-UCGUgCAg -5'
22870 3' -49.5 NC_005137.2 + 35374 0.66 0.994976
Target:  5'- -cACGGCGCAcGCGGaaaaaaCGAcucguuaaacAGCACGUCg -3'
miRNA:   3'- uuUGCUGUGU-CGUUg-----GUU----------UCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 35530 0.68 0.980247
Target:  5'- -uGCGGCGC-GCAuCCGAccGGUACGUUg -3'
miRNA:   3'- uuUGCUGUGuCGUuGGUU--UCGUGCAG- -5'
22870 3' -49.5 NC_005137.2 + 37475 0.66 0.992085
Target:  5'- -cACGACGCAGUuuucGGCCGAcGCGugcauuugcgcCGUCg -3'
miRNA:   3'- uuUGCUGUGUCG----UUGGUUuCGU-----------GCAG- -5'
22870 3' -49.5 NC_005137.2 + 40439 0.66 0.993167
Target:  5'- uGACGACuACGGCGccguaacaaGCCAAAGUgacgGCGaUCg -3'
miRNA:   3'- uUUGCUG-UGUCGU---------UGGUUUCG----UGC-AG- -5'
22870 3' -49.5 NC_005137.2 + 42349 0.69 0.965574
Target:  5'- -uGCGcaguCugGGCAAaugccccgacaacCCGGAGCGCGUCa -3'
miRNA:   3'- uuUGCu---GugUCGUU-------------GGUUUCGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.