Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22870 | 3' | -49.5 | NC_005137.2 | + | 31220 | 0.68 | 0.977824 |
Target: 5'- cAGCGGuCGCGGCAcACCAGcuugaacauGGCcGCGUCg -3' miRNA: 3'- uUUGCU-GUGUCGU-UGGUU---------UCG-UGCAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 50227 | 0.7 | 0.940612 |
Target: 5'- cAAACucGCGCAGCAGCUcgGGguCGUCg -3' miRNA: 3'- -UUUGc-UGUGUCGUUGGuuUCguGCAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 74343 | 0.69 | 0.954448 |
Target: 5'- -cGCGGCACAGCuugGCCAcgugguAGGUACG-Ca -3' miRNA: 3'- uuUGCUGUGUCGu--UGGU------UUCGUGCaG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 128348 | 0.69 | 0.958528 |
Target: 5'- uGAUGACACGGCcgauuuacagcaGACCAc-GUGCGUCa -3' miRNA: 3'- uUUGCUGUGUCG------------UUGGUuuCGUGCAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 56947 | 0.69 | 0.963808 |
Target: 5'- cAAGCGGC-CGGCGAUCAAGuuuuuguaauggcacGCGCGUUu -3' miRNA: 3'- -UUUGCUGuGUCGUUGGUUU---------------CGUGCAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 42349 | 0.69 | 0.965574 |
Target: 5'- -uGCGcaguCugGGCAAaugccccgacaacCCGGAGCGCGUCa -3' miRNA: 3'- uuUGCu---GugUCGUU-------------GGUUUCGUGCAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 110443 | 0.69 | 0.96592 |
Target: 5'- uGAGCGuGCACAccGCGGCC--GGCGCGUa -3' miRNA: 3'- -UUUGC-UGUGU--CGUUGGuuUCGUGCAg -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 97984 | 0.68 | 0.969245 |
Target: 5'- aAAACGggcGCGCGGCGugggugcgcccGCCAAGuggccagcguGCACGUCg -3' miRNA: 3'- -UUUGC---UGUGUCGU-----------UGGUUU----------CGUGCAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 27894 | 0.68 | 0.973502 |
Target: 5'- uGGCGGCGCcacgggucaucgcccGGCAACCAAuugcGCACG-Cg -3' miRNA: 3'- uUUGCUGUG---------------UCGUUGGUUu---CGUGCaG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 31808 | 0.7 | 0.940612 |
Target: 5'- cAGCGAUGCGGCGGcCCAAuGcCGCGUUa -3' miRNA: 3'- uUUGCUGUGUCGUU-GGUUuC-GUGCAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 122724 | 0.7 | 0.935456 |
Target: 5'- -cGCGuGCugGGCGugCuuAGCACGUUa -3' miRNA: 3'- uuUGC-UGugUCGUugGuuUCGUGCAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 53841 | 0.7 | 0.924317 |
Target: 5'- uAAACGAaGCAuuaguuGCAGCCAAAGCACa-- -3' miRNA: 3'- -UUUGCUgUGU------CGUUGGUUUCGUGcag -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 100135 | 0.73 | 0.8075 |
Target: 5'- gAAGCGGCACAGCucgcCCAcguacGGGCGCGcCg -3' miRNA: 3'- -UUUGCUGUGUCGuu--GGU-----UUCGUGCaG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 43811 | 0.73 | 0.835102 |
Target: 5'- cGACGGCACgAGCAGCCGcccGCGCccGUCg -3' miRNA: 3'- uUUGCUGUG-UCGUUGGUuu-CGUG--CAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 87331 | 0.73 | 0.835102 |
Target: 5'- gAAACGGCGCAGCuGGCCAAccGCAUGg- -3' miRNA: 3'- -UUUGCUGUGUCG-UUGGUUu-CGUGCag -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 21850 | 0.73 | 0.843889 |
Target: 5'- aGAAC-ACugGGCAACUuGAGCACGUa -3' miRNA: 3'- -UUUGcUGugUCGUUGGuUUCGUGCAg -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 56151 | 0.72 | 0.852452 |
Target: 5'- --cCGACGCAGCGACC---GCACGa- -3' miRNA: 3'- uuuGCUGUGUCGUUGGuuuCGUGCag -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 98500 | 0.72 | 0.884323 |
Target: 5'- --cCGACGCAG-AACCGAGGCGCa-- -3' miRNA: 3'- uuuGCUGUGUCgUUGGUUUCGUGcag -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 115136 | 0.71 | 0.905538 |
Target: 5'- cGGGCGGCAC-GUGACCGGcGGCACuGUCg -3' miRNA: 3'- -UUUGCUGUGuCGUUGGUU-UCGUG-CAG- -5' |
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22870 | 3' | -49.5 | NC_005137.2 | + | 32889 | 0.71 | 0.912072 |
Target: 5'- cGACGACGCGGUAGCCGGcGGCG-GUg -3' miRNA: 3'- uUUGCUGUGUCGUUGGUU-UCGUgCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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