miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22870 5' -61.7 NC_005137.2 + 74934 0.66 0.646061
Target:  5'- gCACC-UCGCCaauGCUGCCGUcaacacauccuuGUCGUCa -3'
miRNA:   3'- aGUGGcGGCGGc--CGAUGGCG------------CAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 71356 0.66 0.646061
Target:  5'- gUACCGUCGUCGGC---CGCGUUGa- -3'
miRNA:   3'- aGUGGCGGCGGCCGaugGCGCAGCag -5'
22870 5' -61.7 NC_005137.2 + 87194 0.66 0.646061
Target:  5'- -gGgCGCgGgCGGCUGCuCGUGcCGUCg -3'
miRNA:   3'- agUgGCGgCgGCCGAUG-GCGCaGCAG- -5'
22870 5' -61.7 NC_005137.2 + 78795 0.66 0.636168
Target:  5'- aUACgUGCCGUuugcggagCGGgaGCgGCGUCGUCg -3'
miRNA:   3'- aGUG-GCGGCG--------GCCgaUGgCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 82228 0.66 0.636168
Target:  5'- gCACaCGCUGUgCGGC-GCCGCGUCc-- -3'
miRNA:   3'- aGUG-GCGGCG-GCCGaUGGCGCAGcag -5'
22870 5' -61.7 NC_005137.2 + 70704 0.66 0.626273
Target:  5'- gCGCUGCCGaguuaaCGGCUugCGCuUCuUCa -3'
miRNA:   3'- aGUGGCGGCg-----GCCGAugGCGcAGcAG- -5'
22870 5' -61.7 NC_005137.2 + 28255 0.66 0.626273
Target:  5'- aUACuCGCaCGCC----ACCGCGUCGUCu -3'
miRNA:   3'- aGUG-GCG-GCGGccgaUGGCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 90552 0.66 0.626273
Target:  5'- -gAUCGCCGUCacuuuGGCUuguuacggcGCCGUaGUCGUCa -3'
miRNA:   3'- agUGGCGGCGG-----CCGA---------UGGCG-CAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 114782 0.66 0.616382
Target:  5'- -aACUGCCagguuuguugGgCGGCUugCGCacGUCGUCg -3'
miRNA:   3'- agUGGCGG----------CgGCCGAugGCG--CAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 95878 0.66 0.606502
Target:  5'- aCACCGCCGacaCGGgcaUGgUGCGUCG-Cg -3'
miRNA:   3'- aGUGGCGGCg--GCCg--AUgGCGCAGCaG- -5'
22870 5' -61.7 NC_005137.2 + 126728 0.66 0.606502
Target:  5'- -aACCGCa-CCGGCUAUUuagGUGUCGUUa -3'
miRNA:   3'- agUGGCGgcGGCCGAUGG---CGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 85566 0.67 0.592701
Target:  5'- gCugCGCCGCCcgcuacuauaagagGGUuuguaauUAUUGUGUCGUCg -3'
miRNA:   3'- aGugGCGGCGG--------------CCG-------AUGGCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 98352 0.67 0.586802
Target:  5'- gUCACCGUcacgcuugugCGCCGGUU-UgGCGcCGUCg -3'
miRNA:   3'- -AGUGGCG----------GCGGCCGAuGgCGCaGCAG- -5'
22870 5' -61.7 NC_005137.2 + 39221 0.67 0.571127
Target:  5'- uUUGCCGCUGgUGGCcaaauacguuuccagUACCGCGUUcaaGUCg -3'
miRNA:   3'- -AGUGGCGGCgGCCG---------------AUGGCGCAG---CAG- -5'
22870 5' -61.7 NC_005137.2 + 30968 0.67 0.567224
Target:  5'- gCGCCGCgCGCCGcGUcggACCGCGUg--- -3'
miRNA:   3'- aGUGGCG-GCGGC-CGa--UGGCGCAgcag -5'
22870 5' -61.7 NC_005137.2 + 110452 0.67 0.557496
Target:  5'- aCACCGCgGCCGGCgcguacACgGgGUCa-- -3'
miRNA:   3'- aGUGGCGgCGGCCGa-----UGgCgCAGcag -5'
22870 5' -61.7 NC_005137.2 + 70015 0.67 0.557496
Target:  5'- aUCAcCCGCCGgcaaucccaCGGC-ACCGCGUaCGUg -3'
miRNA:   3'- -AGU-GGCGGCg--------GCCGaUGGCGCA-GCAg -5'
22870 5' -61.7 NC_005137.2 + 31683 0.67 0.551683
Target:  5'- aCACCGCCGCgUGGUUgugcggucgcACCgacgugugcacguucGCGUCGUUu -3'
miRNA:   3'- aGUGGCGGCG-GCCGA----------UGG---------------CGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 48227 0.67 0.547817
Target:  5'- aUCACCGUUuCCGuuGCUGCCGcCGUuacCGUCg -3'
miRNA:   3'- -AGUGGCGGcGGC--CGAUGGC-GCA---GCAG- -5'
22870 5' -61.7 NC_005137.2 + 98814 0.67 0.547817
Target:  5'- ---aCGCCGCCGuGCgccgACCGCGUuuuuuucgCGUUg -3'
miRNA:   3'- agugGCGGCGGC-CGa---UGGCGCA--------GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.