Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22870 | 5' | -61.7 | NC_005137.2 | + | 472 | 0.73 | 0.272406 |
Target: 5'- -uGCCGCCGCggCGGCUGCCcagcGUGUUGUa -3' miRNA: 3'- agUGGCGGCG--GCCGAUGG----CGCAGCAg -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 1500 | 0.7 | 0.386795 |
Target: 5'- aCAuuCCGCCGCgCGGCgccgaCGCGUUGUUc -3' miRNA: 3'- aGU--GGCGGCG-GCCGaug--GCGCAGCAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 18549 | 0.68 | 0.509684 |
Target: 5'- gCGCCGUCGCCcauccuGCcGCCGCGUCc-- -3' miRNA: 3'- aGUGGCGGCGGc-----CGaUGGCGCAGcag -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 19265 | 0.7 | 0.428483 |
Target: 5'- aCACCGuuGCCGuGUUGCCGUGcUCu-- -3' miRNA: 3'- aGUGGCggCGGC-CGAUGGCGC-AGcag -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 22866 | 0.68 | 0.49474 |
Target: 5'- aCGCCGCCGCCGcccgacgaccgggauGCggUGCUGCGaUCGg- -3' miRNA: 3'- aGUGGCGGCGGC---------------CG--AUGGCGC-AGCag -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 28255 | 0.66 | 0.626273 |
Target: 5'- aUACuCGCaCGCC----ACCGCGUCGUCu -3' miRNA: 3'- aGUG-GCG-GCGGccgaUGGCGCAGCAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 30968 | 0.67 | 0.567224 |
Target: 5'- gCGCCGCgCGCCGcGUcggACCGCGUg--- -3' miRNA: 3'- aGUGGCG-GCGGC-CGa--UGGCGCAgcag -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 31683 | 0.67 | 0.551683 |
Target: 5'- aCACCGCCGCgUGGUUgugcggucgcACCgacgugugcacguucGCGUCGUUu -3' miRNA: 3'- aGUGGCGGCG-GCCGA----------UGG---------------CGCAGCAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 32852 | 0.68 | 0.538191 |
Target: 5'- -gGCCGCgCGCCGGCUAUaaaagGCG-CGg- -3' miRNA: 3'- agUGGCG-GCGGCCGAUGg----CGCaGCag -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 39221 | 0.67 | 0.571127 |
Target: 5'- uUUGCCGCUGgUGGCcaaauacguuuccagUACCGCGUUcaaGUCg -3' miRNA: 3'- -AGUGGCGGCgGCCG---------------AUGGCGCAG---CAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 48227 | 0.67 | 0.547817 |
Target: 5'- aUCACCGUUuCCGuuGCUGCCGcCGUuacCGUCg -3' miRNA: 3'- -AGUGGCGGcGGC--CGAUGGC-GCA---GCAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 57417 | 0.74 | 0.248415 |
Target: 5'- uUCGuuG-CGCCGGCUGCaaaGCcGUCGUCg -3' miRNA: 3'- -AGUggCgGCGGCCGAUGg--CG-CAGCAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 63633 | 0.69 | 0.437135 |
Target: 5'- aCGCCGCCG-CGGCgacggucgcgcAUCGCGUCG-Cg -3' miRNA: 3'- aGUGGCGGCgGCCGa----------UGGCGCAGCaG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 70015 | 0.67 | 0.557496 |
Target: 5'- aUCAcCCGCCGgcaaucccaCGGC-ACCGCGUaCGUg -3' miRNA: 3'- -AGU-GGCGGCg--------GCCGaUGGCGCA-GCAg -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 70704 | 0.66 | 0.626273 |
Target: 5'- gCGCUGCCGaguuaaCGGCUugCGCuUCuUCa -3' miRNA: 3'- aGUGGCGGCg-----GCCGAugGCGcAGcAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 71356 | 0.66 | 0.646061 |
Target: 5'- gUACCGUCGUCGGC---CGCGUUGa- -3' miRNA: 3'- aGUGGCGGCGGCCGaugGCGCAGCag -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 74650 | 0.82 | 0.071705 |
Target: 5'- aUCGCgGUCGaCgGGUUACCGCGUCGUCg -3' miRNA: 3'- -AGUGgCGGC-GgCCGAUGGCGCAGCAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 74934 | 0.66 | 0.646061 |
Target: 5'- gCACC-UCGCCaauGCUGCCGUcaacacauccuuGUCGUCa -3' miRNA: 3'- aGUGGcGGCGGc--CGAUGGCG------------CAGCAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 78795 | 0.66 | 0.636168 |
Target: 5'- aUACgUGCCGUuugcggagCGGgaGCgGCGUCGUCg -3' miRNA: 3'- aGUG-GCGGCG--------GCCgaUGgCGCAGCAG- -5' |
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22870 | 5' | -61.7 | NC_005137.2 | + | 80166 | 0.71 | 0.333103 |
Target: 5'- aCGuuGCCGCC-GUUugCGCGUUGUUa -3' miRNA: 3'- aGUggCGGCGGcCGAugGCGCAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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