miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22870 5' -61.7 NC_005137.2 + 126728 0.66 0.606502
Target:  5'- -aACCGCa-CCGGCUAUUuagGUGUCGUUa -3'
miRNA:   3'- agUGGCGgcGGCCGAUGG---CGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 114782 0.66 0.616382
Target:  5'- -aACUGCCagguuuguugGgCGGCUugCGCacGUCGUCg -3'
miRNA:   3'- agUGGCGG----------CgGCCGAugGCG--CAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 110452 0.67 0.557496
Target:  5'- aCACCGCgGCCGGCgcguacACgGgGUCa-- -3'
miRNA:   3'- aGUGGCGgCGGCCGa-----UGgCgCAGcag -5'
22870 5' -61.7 NC_005137.2 + 108673 0.69 0.463675
Target:  5'- -aGCUGCCGCCgaGGgaGCCGCGUuUGUg -3'
miRNA:   3'- agUGGCGGCGG--CCgaUGGCGCA-GCAg -5'
22870 5' -61.7 NC_005137.2 + 98814 0.67 0.547817
Target:  5'- ---aCGCCGCCGuGCgccgACCGCGUuuuuuucgCGUUg -3'
miRNA:   3'- agugGCGGCGGC-CGa---UGGCGCA--------GCAG- -5'
22870 5' -61.7 NC_005137.2 + 98352 0.67 0.586802
Target:  5'- gUCACCGUcacgcuugugCGCCGGUU-UgGCGcCGUCg -3'
miRNA:   3'- -AGUGGCG----------GCGGCCGAuGgCGCaGCAG- -5'
22870 5' -61.7 NC_005137.2 + 98115 1.1 0.000728
Target:  5'- gUCACCGCCGCCGGCUACCGCGUCGUCg -3'
miRNA:   3'- -AGUGGCGGCGGCCGAUGGCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 96043 0.71 0.370885
Target:  5'- cCACCGCCGCCcaacuuagcgacGaacGCUACCGCGUUa-- -3'
miRNA:   3'- aGUGGCGGCGG------------C---CGAUGGCGCAGcag -5'
22870 5' -61.7 NC_005137.2 + 95878 0.66 0.606502
Target:  5'- aCACCGCCGacaCGGgcaUGgUGCGUCG-Cg -3'
miRNA:   3'- aGUGGCGGCg--GCCg--AUgGCGCAGCaG- -5'
22870 5' -61.7 NC_005137.2 + 93278 0.69 0.479084
Target:  5'- -gGCCaGCCGCCGGUUuuugcuaccuugaaACgGCGUgaCGUCa -3'
miRNA:   3'- agUGG-CGGCGGCCGA--------------UGgCGCA--GCAG- -5'
22870 5' -61.7 NC_005137.2 + 90552 0.66 0.626273
Target:  5'- -gAUCGCCGUCacuuuGGCUuguuacggcGCCGUaGUCGUCa -3'
miRNA:   3'- agUGGCGGCGG-----CCGA---------UGGCG-CAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 87970 0.7 0.411488
Target:  5'- gUCGCCGuCCGUgGGCga-CGCGUgGUUg -3'
miRNA:   3'- -AGUGGC-GGCGgCCGaugGCGCAgCAG- -5'
22870 5' -61.7 NC_005137.2 + 87194 0.66 0.646061
Target:  5'- -gGgCGCgGgCGGCUGCuCGUGcCGUCg -3'
miRNA:   3'- agUgGCGgCgGCCGAUG-GCGCaGCAG- -5'
22870 5' -61.7 NC_005137.2 + 85566 0.67 0.592701
Target:  5'- gCugCGCCGCCcgcuacuauaagagGGUuuguaauUAUUGUGUCGUCg -3'
miRNA:   3'- aGugGCGGCGG--------------CCG-------AUGGCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 82228 0.66 0.636168
Target:  5'- gCACaCGCUGUgCGGC-GCCGCGUCc-- -3'
miRNA:   3'- aGUG-GCGGCG-GCCGaUGGCGCAGcag -5'
22870 5' -61.7 NC_005137.2 + 80166 0.71 0.333103
Target:  5'- aCGuuGCCGCC-GUUugCGCGUUGUUa -3'
miRNA:   3'- aGUggCGGCGGcCGAugGCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 78795 0.66 0.636168
Target:  5'- aUACgUGCCGUuugcggagCGGgaGCgGCGUCGUCg -3'
miRNA:   3'- aGUG-GCGGCG--------GCCgaUGgCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 74934 0.66 0.646061
Target:  5'- gCACC-UCGCCaauGCUGCCGUcaacacauccuuGUCGUCa -3'
miRNA:   3'- aGUGGcGGCGGc--CGAUGGCG------------CAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 74650 0.82 0.071705
Target:  5'- aUCGCgGUCGaCgGGUUACCGCGUCGUCg -3'
miRNA:   3'- -AGUGgCGGC-GgCCGAUGGCGCAGCAG- -5'
22870 5' -61.7 NC_005137.2 + 71356 0.66 0.646061
Target:  5'- gUACCGUCGUCGGC---CGCGUUGa- -3'
miRNA:   3'- aGUGGCGGCGGCCGaugGCGCAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.