miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 2002 0.72 0.410304
Target:  5'- uGCACAGCuCGugcACGCUGCgGCGCAgAc -3'
miRNA:   3'- -CGUGUCGuGU---UGCGGCGgCGCGUgUu -5'
22871 3' -58 NC_005137.2 + 96421 0.72 0.410304
Target:  5'- cGCGCGGCGacGCGcCCGCCGCGuUGCGu -3'
miRNA:   3'- -CGUGUCGUguUGC-GGCGGCGC-GUGUu -5'
22871 3' -58 NC_005137.2 + 37419 0.72 0.42537
Target:  5'- aGCGCcGCGCGuuuggaucagcgugAuUGCCGCCGCGCACc- -3'
miRNA:   3'- -CGUGuCGUGU--------------U-GCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 43809 0.72 0.428063
Target:  5'- aGCgACGGCACGAgcaGCCGCC-CGCGCc- -3'
miRNA:   3'- -CG-UGUCGUGUUg--CGGCGGcGCGUGuu -5'
22871 3' -58 NC_005137.2 + 119686 0.71 0.459265
Target:  5'- gGCACGGCGCGcgcacacagcuuagcACGuacgcaucCCGCCGCGCAg-- -3'
miRNA:   3'- -CGUGUCGUGU---------------UGC--------GGCGGCGCGUguu -5'
22871 3' -58 NC_005137.2 + 31670 0.71 0.483922
Target:  5'- uGCAUAGCggACGACaCCGCCGCGUg--- -3'
miRNA:   3'- -CGUGUCG--UGUUGcGGCGGCGCGuguu -5'
22871 3' -58 NC_005137.2 + 110710 0.71 0.483922
Target:  5'- cGCGCGuGCGCAACGgUG-UGCGCGCAGa -3'
miRNA:   3'- -CGUGU-CGUGUUGCgGCgGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 110803 0.71 0.493574
Target:  5'- cGCGCuuucGCAauCGACGCCGCCcgccgaCGCGCAAg -3'
miRNA:   3'- -CGUGu---CGU--GUUGCGGCGGc-----GCGUGUU- -5'
22871 3' -58 NC_005137.2 + 46682 0.7 0.503313
Target:  5'- aGCAC-GCGCcaguAUGCuCGCaCGCGCGCAAc -3'
miRNA:   3'- -CGUGuCGUGu---UGCG-GCG-GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 63008 0.7 0.553147
Target:  5'- cCAUGGUGCGGCGCCGgCGUGUcgGCAAg -3'
miRNA:   3'- cGUGUCGUGUUGCGGCgGCGCG--UGUU- -5'
22871 3' -58 NC_005137.2 + 57422 0.69 0.563303
Target:  5'- uGCGcCGGCuGCAAagcCGUCGUCGCGUACGAa -3'
miRNA:   3'- -CGU-GUCG-UGUU---GCGGCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 106710 0.69 0.563303
Target:  5'- cCGCAGcCGCaAACGCCGCCGUuugauuGCGCc- -3'
miRNA:   3'- cGUGUC-GUG-UUGCGGCGGCG------CGUGuu -5'
22871 3' -58 NC_005137.2 + 130863 0.69 0.563303
Target:  5'- cGCGCAGC-CcGCGCCugaauuguacGCCGCGgACGc -3'
miRNA:   3'- -CGUGUCGuGuUGCGG----------CGGCGCgUGUu -5'
22871 3' -58 NC_005137.2 + 6988 0.69 0.573508
Target:  5'- cGCACAcGgACgAGCgGUCGCCGgGCACAAc -3'
miRNA:   3'- -CGUGU-CgUG-UUG-CGGCGGCgCGUGUU- -5'
22871 3' -58 NC_005137.2 + 28088 0.68 0.656071
Target:  5'- aCGCAGCGCGGC-CUGCCGgGUgACAc -3'
miRNA:   3'- cGUGUCGUGUUGcGGCGGCgCG-UGUu -5'
22871 3' -58 NC_005137.2 + 99942 0.68 0.635383
Target:  5'- cGCGCAcGCauguuggacaACGGcCGCgGCCGCGCGCc- -3'
miRNA:   3'- -CGUGU-CG----------UGUU-GCGgCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 1505 0.68 0.645732
Target:  5'- cCGCcGCGCGGCGCCGaCGCGUuguuCAAu -3'
miRNA:   3'- cGUGuCGUGUUGCGGCgGCGCGu---GUU- -5'
22871 3' -58 NC_005137.2 + 31230 0.68 0.656071
Target:  5'- gGCACaccAGCuugaACAugGCCGCguCGUGCGCGc -3'
miRNA:   3'- -CGUG---UCG----UGUugCGGCG--GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 130527 0.68 0.656071
Target:  5'- uGUACAacacGCugGGCaGCCGCCGCggcgGCAUAGa -3'
miRNA:   3'- -CGUGU----CGugUUG-CGGCGGCG----CGUGUU- -5'
22871 3' -58 NC_005137.2 + 107925 0.68 0.656071
Target:  5'- cCGCGGaACAACG-CGCCGUGUACGc -3'
miRNA:   3'- cGUGUCgUGUUGCgGCGGCGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.