miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 5' -54.1 NC_005137.2 + 119567 0.66 0.93624
Target:  5'- -cUCGGUAgAGCGaCGCaCGCug-AGCa -3'
miRNA:   3'- aaAGCCAUgUUGCgGCG-GCGucaUCG- -5'
22871 5' -54.1 NC_005137.2 + 12067 0.66 0.93624
Target:  5'- -gUCGGUcgGCAAucacguCGCCGaCCGCAaGU-GCg -3'
miRNA:   3'- aaAGCCA--UGUU------GCGGC-GGCGU-CAuCG- -5'
22871 5' -54.1 NC_005137.2 + 24300 0.66 0.931078
Target:  5'- --aCGGcgGCGuuUGCgGCUGCGGUGGUg -3'
miRNA:   3'- aaaGCCa-UGUu-GCGgCGGCGUCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 677 0.66 0.931078
Target:  5'- --cUGGUcaaACAACG-CGCUGCgaucGGUAGCg -3'
miRNA:   3'- aaaGCCA---UGUUGCgGCGGCG----UCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 66477 0.66 0.925662
Target:  5'- -gUUGGU-CAACGuuGCCGguGc-GCa -3'
miRNA:   3'- aaAGCCAuGUUGCggCGGCguCauCG- -5'
22871 5' -54.1 NC_005137.2 + 73118 0.66 0.919991
Target:  5'- -gUCcuGUACGGCGUCGUCGUAGUcGUc -3'
miRNA:   3'- aaAGc-CAUGUUGCGGCGGCGUCAuCG- -5'
22871 5' -54.1 NC_005137.2 + 74331 0.66 0.91941
Target:  5'- --cCGGUcacguccACAGCGCCGUCgGCA--AGCa -3'
miRNA:   3'- aaaGCCA-------UGUUGCGGCGG-CGUcaUCG- -5'
22871 5' -54.1 NC_005137.2 + 76200 0.67 0.90789
Target:  5'- uUUUUGGUG--GCGCuuuuuauguaCGuuGCGGUAGCg -3'
miRNA:   3'- -AAAGCCAUguUGCG----------GCggCGUCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 97773 0.67 0.90789
Target:  5'- --aCGGUgagucgGCGGCGUuaaacugguucuCGCCGCGGUGcGCu -3'
miRNA:   3'- aaaGCCA------UGUUGCG------------GCGGCGUCAU-CG- -5'
22871 5' -54.1 NC_005137.2 + 1495 0.67 0.894788
Target:  5'- --cCGGUACAuu-CCGCCGCGcGgcGCc -3'
miRNA:   3'- aaaGCCAUGUugcGGCGGCGU-CauCG- -5'
22871 5' -54.1 NC_005137.2 + 95482 0.67 0.894788
Target:  5'- --cCGGUcgGAUGCgCGCCGCAcgGGCg -3'
miRNA:   3'- aaaGCCAugUUGCG-GCGGCGUcaUCG- -5'
22871 5' -54.1 NC_005137.2 + 61135 0.68 0.865693
Target:  5'- -gUUGGUGCaAACGUCGUCGCAaauuGCu -3'
miRNA:   3'- aaAGCCAUG-UUGCGGCGGCGUcau-CG- -5'
22871 5' -54.1 NC_005137.2 + 89534 0.68 0.857846
Target:  5'- ---aGGU-CAACGuCCGCUGCGGacAGCg -3'
miRNA:   3'- aaagCCAuGUUGC-GGCGGCGUCa-UCG- -5'
22871 5' -54.1 NC_005137.2 + 76596 0.68 0.857846
Target:  5'- -cUCGuGUugGACGCCGCCGaaCAGa--- -3'
miRNA:   3'- aaAGC-CAugUUGCGGCGGC--GUCaucg -5'
22871 5' -54.1 NC_005137.2 + 31676 0.68 0.857846
Target:  5'- --gCGG-ACGACaCCGCCGC-GUGGUu -3'
miRNA:   3'- aaaGCCaUGUUGcGGCGGCGuCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 130188 0.69 0.824361
Target:  5'- --cUGGUGUAAacgUGCCGCCGCcaccuGUAGCg -3'
miRNA:   3'- aaaGCCAUGUU---GCGGCGGCGu----CAUCG- -5'
22871 5' -54.1 NC_005137.2 + 27311 0.69 0.815505
Target:  5'- --aCGGUgGCGGCGgCGUUuuggGCAGUGGCg -3'
miRNA:   3'- aaaGCCA-UGUUGCgGCGG----CGUCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 63614 0.69 0.806471
Target:  5'- uUUUUGGaacaaaaauuCAACGCCGCCGCGGcgacGGUc -3'
miRNA:   3'- -AAAGCCau--------GUUGCGGCGGCGUCa---UCG- -5'
22871 5' -54.1 NC_005137.2 + 2572 0.69 0.787909
Target:  5'- ---aGGUGCAGCGCauuaaCGCAgGUGGCg -3'
miRNA:   3'- aaagCCAUGUUGCGgcg--GCGU-CAUCG- -5'
22871 5' -54.1 NC_005137.2 + 52226 0.7 0.7784
Target:  5'- --aCGGcACGuauacuCGUCGCCGCAGaAGCu -3'
miRNA:   3'- aaaGCCaUGUu-----GCGGCGGCGUCaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.