miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 5' -54.1 NC_005137.2 + 74331 0.66 0.91941
Target:  5'- --cCGGUcacguccACAGCGCCGUCgGCA--AGCa -3'
miRNA:   3'- aaaGCCA-------UGUUGCGGCGG-CGUcaUCG- -5'
22871 5' -54.1 NC_005137.2 + 24300 0.66 0.931078
Target:  5'- --aCGGcgGCGuuUGCgGCUGCGGUGGUg -3'
miRNA:   3'- aaaGCCa-UGUu-GCGgCGGCGUCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 677 0.66 0.931078
Target:  5'- --cUGGUcaaACAACG-CGCUGCgaucGGUAGCg -3'
miRNA:   3'- aaaGCCA---UGUUGCgGCGGCG----UCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 34589 0.71 0.708494
Target:  5'- --gCGGcggGC-GCGUCGCCGCgcgGGUAGCg -3'
miRNA:   3'- aaaGCCa--UGuUGCGGCGGCG---UCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 58693 0.7 0.758973
Target:  5'- gUUCGG-ACAGUGgCGCCGCGuUGGCg -3'
miRNA:   3'- aAAGCCaUGUUGCgGCGGCGUcAUCG- -5'
22871 5' -54.1 NC_005137.2 + 97228 0.7 0.758973
Target:  5'- -gUUGGcacagcACAACGCCGCCGCGcacaaUGGCc -3'
miRNA:   3'- aaAGCCa-----UGUUGCGGCGGCGUc----AUCG- -5'
22871 5' -54.1 NC_005137.2 + 67348 0.73 0.581522
Target:  5'- gUUCGGUgaccgcgggcGCGACGCgaugcgcgaccguCGCCGCGGcGGCg -3'
miRNA:   3'- aAAGCCA----------UGUUGCG-------------GCGGCGUCaUCG- -5'
22871 5' -54.1 NC_005137.2 + 20556 0.72 0.624642
Target:  5'- --cCGuGUAC-GCGCCgGCCGCGGUGuGCa -3'
miRNA:   3'- aaaGC-CAUGuUGCGG-CGGCGUCAU-CG- -5'
22871 5' -54.1 NC_005137.2 + 110027 0.7 0.739069
Target:  5'- gUUUGcGUGCAagcgcggcaaaACGCgCGCCGCAGgcAGCa -3'
miRNA:   3'- aAAGC-CAUGU-----------UGCG-GCGGCGUCa-UCG- -5'
22871 5' -54.1 NC_005137.2 + 52226 0.7 0.7784
Target:  5'- --aCGGcACGuauacuCGUCGCCGCAGaAGCu -3'
miRNA:   3'- aaaGCCaUGUu-----GCGGCGGCGUCaUCG- -5'
22871 5' -54.1 NC_005137.2 + 97773 0.67 0.90789
Target:  5'- --aCGGUgagucgGCGGCGUuaaacugguucuCGCCGCGGUGcGCu -3'
miRNA:   3'- aaaGCCA------UGUUGCG------------GCGGCGUCAU-CG- -5'
22871 5' -54.1 NC_005137.2 + 66209 0.74 0.541094
Target:  5'- aUUCGGUGCAcAUGuuGgCGCGGcUAGCg -3'
miRNA:   3'- aAAGCCAUGU-UGCggCgGCGUC-AUCG- -5'
22871 5' -54.1 NC_005137.2 + 89534 0.68 0.857846
Target:  5'- ---aGGU-CAACGuCCGCUGCGGacAGCg -3'
miRNA:   3'- aaagCCAuGUUGC-GGCGGCGUCa-UCG- -5'
22871 5' -54.1 NC_005137.2 + 123082 0.72 0.645749
Target:  5'- -aUUGuGUACAACGCCGCgUGCAGcacUAGUu -3'
miRNA:   3'- aaAGC-CAUGUUGCGGCG-GCGUC---AUCG- -5'
22871 5' -54.1 NC_005137.2 + 97268 1.09 0.003533
Target:  5'- uUUUCGGUACAACGCCGCCGCAGUAGCc -3'
miRNA:   3'- -AAAGCCAUGUUGCGGCGGCGUCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 66477 0.66 0.925662
Target:  5'- -gUUGGU-CAACGuuGCCGguGc-GCa -3'
miRNA:   3'- aaAGCCAuGUUGCggCGGCguCauCG- -5'
22871 5' -54.1 NC_005137.2 + 76200 0.67 0.90789
Target:  5'- uUUUUGGUG--GCGCuuuuuauguaCGuuGCGGUAGCg -3'
miRNA:   3'- -AAAGCCAUguUGCG----------GCggCGUCAUCG- -5'
22871 5' -54.1 NC_005137.2 + 95482 0.67 0.894788
Target:  5'- --cCGGUcgGAUGCgCGCCGCAcgGGCg -3'
miRNA:   3'- aaaGCCAugUUGCG-GCGGCGUcaUCG- -5'
22871 5' -54.1 NC_005137.2 + 1495 0.67 0.894788
Target:  5'- --cCGGUACAuu-CCGCCGCGcGgcGCc -3'
miRNA:   3'- aaaGCCAUGUugcGGCGGCGU-CauCG- -5'
22871 5' -54.1 NC_005137.2 + 61135 0.68 0.865693
Target:  5'- -gUUGGUGCaAACGUCGUCGCAaauuGCu -3'
miRNA:   3'- aaAGCCAUG-UUGCGGCGGCGUcau-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.