miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22872 3' -52.4 NC_005137.2 + 65252 0.7 0.868284
Target:  5'- ----cGCCGucugguacaGCGAGCCCGGCGGCGa- -3'
miRNA:   3'- gcuuaCGGC---------CGUUUGGGCUGUUGCac -5'
22872 3' -52.4 NC_005137.2 + 130934 0.7 0.883125
Target:  5'- ---uUGCCGGCAGGuaCGACGACGc- -3'
miRNA:   3'- gcuuACGGCCGUUUggGCUGUUGCac -5'
22872 3' -52.4 NC_005137.2 + 110626 0.69 0.890194
Target:  5'- uGAcgGCCGuGCAcaaacGCgCCGACGGCGUu -3'
miRNA:   3'- gCUuaCGGC-CGUu----UG-GGCUGUUGCAc -5'
22872 3' -52.4 NC_005137.2 + 70021 0.68 0.937842
Target:  5'- ----cGCCGGCAAucCCaCGGCAccgcguACGUGg -3'
miRNA:   3'- gcuuaCGGCCGUUu-GG-GCUGU------UGCAC- -5'
22872 3' -52.4 NC_005137.2 + 74439 0.67 0.951559
Target:  5'- gCGggUcGUCggGGCGuuugaauguGCCCGGCAugGUGg -3'
miRNA:   3'- -GCuuA-CGG--CCGUu--------UGGGCUGUugCAC- -5'
22872 3' -52.4 NC_005137.2 + 41169 0.66 0.969611
Target:  5'- aCGGcgGUGUgguaGGCGuGCCUGACAACGg- -3'
miRNA:   3'- -GCU--UACGg---CCGUuUGGGCUGUUGCac -5'
22872 3' -52.4 NC_005137.2 + 24213 0.66 0.975269
Target:  5'- -cAAUGCUGGCAAGCCUccccaugcuGACAAUa-- -3'
miRNA:   3'- gcUUACGGCCGUUUGGG---------CUGUUGcac -5'
22872 3' -52.4 NC_005137.2 + 50099 0.66 0.975269
Target:  5'- ----gGCCGcGCAAauGCgCGugAGCGUGg -3'
miRNA:   3'- gcuuaCGGC-CGUU--UGgGCugUUGCAC- -5'
22872 3' -52.4 NC_005137.2 + 100939 0.66 0.980117
Target:  5'- -aAGUaCCGGUcacGGGCCCGGCAGCuGUGc -3'
miRNA:   3'- gcUUAcGGCCG---UUUGGGCUGUUG-CAC- -5'
22872 3' -52.4 NC_005137.2 + 72144 0.74 0.691541
Target:  5'- ---cUGCCGGCAcgUCCaACGACGUGg -3'
miRNA:   3'- gcuuACGGCCGUuuGGGcUGUUGCAC- -5'
22872 3' -52.4 NC_005137.2 + 97084 1.08 0.006561
Target:  5'- gCGAAUGCCGGCAAACCCGACAACGUGc -3'
miRNA:   3'- -GCUUACGGCCGUUUGGGCUGUUGCAC- -5'
22872 3' -52.4 NC_005137.2 + 63063 0.8 0.342503
Target:  5'- -cAAUGCCaaucaaGGCGGACCCGGCGACGUa -3'
miRNA:   3'- gcUUACGG------CCGUUUGGGCUGUUGCAc -5'
22872 3' -52.4 NC_005137.2 + 87222 0.7 0.860523
Target:  5'- uGAAaGUCGGCAAACCCGcUGGCGc- -3'
miRNA:   3'- gCUUaCGGCCGUUUGGGCuGUUGCac -5'
22872 3' -52.4 NC_005137.2 + 86504 0.69 0.909942
Target:  5'- uGAcgGCCgauGGCAAGCUCGACccGACGc- -3'
miRNA:   3'- gCUuaCGG---CCGUUUGGGCUG--UUGCac -5'
22872 3' -52.4 NC_005137.2 + 121767 0.68 0.937842
Target:  5'- gGuuUGCCauGGCAAGCCaCGACGuuuauugugaACGUGc -3'
miRNA:   3'- gCuuACGG--CCGUUUGG-GCUGU----------UGCAC- -5'
22872 3' -52.4 NC_005137.2 + 98471 0.68 0.937842
Target:  5'- cCGuAUGCCGGUu--UuuGAUGACGUGa -3'
miRNA:   3'- -GCuUACGGCCGuuuGggCUGUUGCAC- -5'
22872 3' -52.4 NC_005137.2 + 92509 0.66 0.96646
Target:  5'- -aAAUGCCGGCGGGCC----AACGUGc -3'
miRNA:   3'- gcUUACGGCCGUUUGGgcugUUGCAC- -5'
22872 3' -52.4 NC_005137.2 + 52948 0.66 0.96646
Target:  5'- -cGGUGCCGGCAAAgUUGAacgucuuguuuuUAACGUGu -3'
miRNA:   3'- gcUUACGGCCGUUUgGGCU------------GUUGCAC- -5'
22872 3' -52.4 NC_005137.2 + 106590 0.66 0.975006
Target:  5'- aCGAGUGCuaucaauuugaaaCGGC-GGCCUGACGccGCGUc -3'
miRNA:   3'- -GCUUACG-------------GCCGuUUGGGCUGU--UGCAc -5'
22872 3' -52.4 NC_005137.2 + 9075 0.66 0.975269
Target:  5'- aGAcgGCCucauuGGCAAAUCCucaaacucgagcGACAGCGUc -3'
miRNA:   3'- gCUuaCGG-----CCGUUUGGG------------CUGUUGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.