Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22872 | 3' | -52.4 | NC_005137.2 | + | 9075 | 0.66 | 0.975269 |
Target: 5'- aGAcgGCCucauuGGCAAAUCCucaaacucgagcGACAGCGUc -3' miRNA: 3'- gCUuaCGG-----CCGUUUGGG------------CUGUUGCAc -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 97084 | 1.08 | 0.006561 |
Target: 5'- gCGAAUGCCGGCAAACCCGACAACGUGc -3' miRNA: 3'- -GCUUACGGCCGUUUGGGCUGUUGCAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 63063 | 0.8 | 0.342503 |
Target: 5'- -cAAUGCCaaucaaGGCGGACCCGGCGACGUa -3' miRNA: 3'- gcUUACGG------CCGUUUGGGCUGUUGCAc -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 87222 | 0.7 | 0.860523 |
Target: 5'- uGAAaGUCGGCAAACCCGcUGGCGc- -3' miRNA: 3'- gCUUaCGGCCGUUUGGGCuGUUGCac -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 86504 | 0.69 | 0.909942 |
Target: 5'- uGAcgGCCgauGGCAAGCUCGACccGACGc- -3' miRNA: 3'- gCUuaCGG---CCGUUUGGGCUG--UUGCac -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 121767 | 0.68 | 0.937842 |
Target: 5'- gGuuUGCCauGGCAAGCCaCGACGuuuauugugaACGUGc -3' miRNA: 3'- gCuuACGG--CCGUUUGG-GCUGU----------UGCAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 98471 | 0.68 | 0.937842 |
Target: 5'- cCGuAUGCCGGUu--UuuGAUGACGUGa -3' miRNA: 3'- -GCuUACGGCCGuuuGggCUGUUGCAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 92509 | 0.66 | 0.96646 |
Target: 5'- -aAAUGCCGGCGGGCC----AACGUGc -3' miRNA: 3'- gcUUACGGCCGUUUGGgcugUUGCAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 52948 | 0.66 | 0.96646 |
Target: 5'- -cGGUGCCGGCAAAgUUGAacgucuuguuuuUAACGUGu -3' miRNA: 3'- gcUUACGGCCGUUUgGGCU------------GUUGCAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 106590 | 0.66 | 0.975006 |
Target: 5'- aCGAGUGCuaucaauuugaaaCGGC-GGCCUGACGccGCGUc -3' miRNA: 3'- -GCUUACG-------------GCCGuUUGGGCUGU--UGCAc -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 72144 | 0.74 | 0.691541 |
Target: 5'- ---cUGCCGGCAcgUCCaACGACGUGg -3' miRNA: 3'- gcuuACGGCCGUuuGGGcUGUUGCAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 100939 | 0.66 | 0.980117 |
Target: 5'- -aAGUaCCGGUcacGGGCCCGGCAGCuGUGc -3' miRNA: 3'- gcUUAcGGCCG---UUUGGGCUGUUG-CAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 50099 | 0.66 | 0.975269 |
Target: 5'- ----gGCCGcGCAAauGCgCGugAGCGUGg -3' miRNA: 3'- gcuuaCGGC-CGUU--UGgGCugUUGCAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 24213 | 0.66 | 0.975269 |
Target: 5'- -cAAUGCUGGCAAGCCUccccaugcuGACAAUa-- -3' miRNA: 3'- gcUUACGGCCGUUUGGG---------CUGUUGcac -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 41169 | 0.66 | 0.969611 |
Target: 5'- aCGGcgGUGUgguaGGCGuGCCUGACAACGg- -3' miRNA: 3'- -GCU--UACGg---CCGUuUGGGCUGUUGCac -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 74439 | 0.67 | 0.951559 |
Target: 5'- gCGggUcGUCggGGCGuuugaauguGCCCGGCAugGUGg -3' miRNA: 3'- -GCuuA-CGG--CCGUu--------UGGGCUGUugCAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 70021 | 0.68 | 0.937842 |
Target: 5'- ----cGCCGGCAAucCCaCGGCAccgcguACGUGg -3' miRNA: 3'- gcuuaCGGCCGUUu-GG-GCUGU------UGCAC- -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 110626 | 0.69 | 0.890194 |
Target: 5'- uGAcgGCCGuGCAcaaacGCgCCGACGGCGUu -3' miRNA: 3'- gCUuaCGGC-CGUu----UG-GGCUGUUGCAc -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 130934 | 0.7 | 0.883125 |
Target: 5'- ---uUGCCGGCAGGuaCGACGACGc- -3' miRNA: 3'- gcuuACGGCCGUUUggGCUGUUGCac -5' |
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22872 | 3' | -52.4 | NC_005137.2 | + | 65252 | 0.7 | 0.868284 |
Target: 5'- ----cGCCGucugguacaGCGAGCCCGGCGGCGa- -3' miRNA: 3'- gcuuaCGGC---------CGUUUGGGCUGUUGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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