miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22873 3' -49.1 NC_005137.2 + 101868 0.71 0.949222
Target:  5'- aCGcAGCaauuguUUUGUCu---UGGCGCCGGCc -3'
miRNA:   3'- -GC-UCGc-----AAAUAGuuuuACCGCGGCCG- -5'
22873 3' -49.1 NC_005137.2 + 104764 0.67 0.99561
Target:  5'- gGGGCG-UUGUUAAcguuccacgagguucGGUGGCccaGUCGGCg -3'
miRNA:   3'- gCUCGCaAAUAGUU---------------UUACCG---CGGCCG- -5'
22873 3' -49.1 NC_005137.2 + 113667 0.66 0.997605
Target:  5'- -uAGUGUacuauuuaUAUCAGAGUGGUGCgCGuGCg -3'
miRNA:   3'- gcUCGCAa-------AUAGUUUUACCGCG-GC-CG- -5'
22873 3' -49.1 NC_005137.2 + 116340 0.67 0.996014
Target:  5'- aCGGGCGUUUacGUCAAGcuuaaacgauuuGUGcGCGCUGa- -3'
miRNA:   3'- -GCUCGCAAA--UAGUUU------------UAC-CGCGGCcg -5'
22873 3' -49.1 NC_005137.2 + 128560 0.68 0.990262
Target:  5'- aGAGUG---GUCGucg-GGCGCgGGCa -3'
miRNA:   3'- gCUCGCaaaUAGUuuuaCCGCGgCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.