miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22876 5' -57.2 NC_005137.2 + 99942 0.66 0.837064
Target:  5'- cGCGCacgcauGUUggacaacggccGCgGCCGCGCGCCu-- -3'
miRNA:   3'- -CGCGcau---CAA-----------UGgCGGCGCGCGGuaa -5'
22876 5' -57.2 NC_005137.2 + 123853 0.66 0.837064
Target:  5'- aGCGCGcGGcUUACaCGCCGCGCa----- -3'
miRNA:   3'- -CGCGCaUC-AAUG-GCGGCGCGcgguaa -5'
22876 5' -57.2 NC_005137.2 + 99363 0.66 0.828681
Target:  5'- -aGCGUGGUcgcguCCGCgCGCGUGCa--- -3'
miRNA:   3'- cgCGCAUCAau---GGCG-GCGCGCGguaa -5'
22876 5' -57.2 NC_005137.2 + 84914 0.66 0.828681
Target:  5'- cGUGCGU-GUUGCaCGUCGCGU-CCAa- -3'
miRNA:   3'- -CGCGCAuCAAUG-GCGGCGCGcGGUaa -5'
22876 5' -57.2 NC_005137.2 + 88024 0.66 0.820116
Target:  5'- gGCGCGgcc--ACCGCCgagGCGgGCCAc- -3'
miRNA:   3'- -CGCGCaucaaUGGCGG---CGCgCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 46046 0.66 0.820116
Target:  5'- gGCGCcaacgaGGUuaUGCCGCCGCugcacagcguGCGCCGc- -3'
miRNA:   3'- -CGCGca----UCA--AUGGCGGCG----------CGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 98807 0.66 0.820116
Target:  5'- cUGCcaaac-GCCGCCGUGCGCCGa- -3'
miRNA:   3'- cGCGcaucaaUGGCGGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 97190 0.66 0.820116
Target:  5'- -aGCGUcGUUGCCGCCGCcauuaaGCuCCGa- -3'
miRNA:   3'- cgCGCAuCAAUGGCGGCG------CGcGGUaa -5'
22876 5' -57.2 NC_005137.2 + 61832 0.66 0.811377
Target:  5'- aGCGCGUcuUUGCCGagCGUgucuGCGCCAc- -3'
miRNA:   3'- -CGCGCAucAAUGGCg-GCG----CGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 114400 0.66 0.811377
Target:  5'- cCGCGauUAGUcgaGCCGCCGCGCaUCAa- -3'
miRNA:   3'- cGCGC--AUCAa--UGGCGGCGCGcGGUaa -5'
22876 5' -57.2 NC_005137.2 + 30939 0.66 0.806054
Target:  5'- cGCGCGccgcGgcACaaagcaugcugaacgCGCCGCGCGCCGc- -3'
miRNA:   3'- -CGCGCau--CaaUG---------------GCGGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 11310 0.66 0.793413
Target:  5'- aUGCGUAcGUgcuaaGCUGUgugCGCGCGCCGUg -3'
miRNA:   3'- cGCGCAU-CAa----UGGCG---GCGCGCGGUAa -5'
22876 5' -57.2 NC_005137.2 + 95588 0.66 0.793413
Target:  5'- gGCGuUGUAGUUaaugAUgGgCGCGCGCCGa- -3'
miRNA:   3'- -CGC-GCAUCAA----UGgCgGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 15845 0.67 0.784205
Target:  5'- gGCGCGUuaacagcaAGUuaaacgacagUGCCGCCGgucaCGUGCCGc- -3'
miRNA:   3'- -CGCGCA--------UCA----------AUGGCGGC----GCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 95644 0.67 0.774858
Target:  5'- cCGCGUG-----CGCCGUGCGCCGa- -3'
miRNA:   3'- cGCGCAUcaaugGCGGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 130190 0.67 0.765381
Target:  5'- -gGUGUAaacgUGCCGCCGCcaccuguaGCGCCAc- -3'
miRNA:   3'- cgCGCAUca--AUGGCGGCG--------CGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 129642 0.67 0.759637
Target:  5'- aCGCGUcaauAcguuucgaccgacacGUUGCCGCCGC-CGCCAc- -3'
miRNA:   3'- cGCGCA----U---------------CAAUGGCGGCGcGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 84292 0.67 0.758676
Target:  5'- cGCGCGUGGaaacggugucgauguCCGuuGCGCGCg--- -3'
miRNA:   3'- -CGCGCAUCaau------------GGCggCGCGCGguaa -5'
22876 5' -57.2 NC_005137.2 + 85503 0.67 0.746077
Target:  5'- aGCGUGUAGUgACCGCaGgGCacgGCCAc- -3'
miRNA:   3'- -CGCGCAUCAaUGGCGgCgCG---CGGUaa -5'
22876 5' -57.2 NC_005137.2 + 93904 0.67 0.746077
Target:  5'- gGCGCGUA--UGCCGCCauguuugcCGUGUCAUUg -3'
miRNA:   3'- -CGCGCAUcaAUGGCGGc-------GCGCGGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.