miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22876 5' -57.2 NC_005137.2 + 37438 0.75 0.314326
Target:  5'- -aGCGUGaUUGCCGCCGCGCaCCAc- -3'
miRNA:   3'- cgCGCAUcAAUGGCGGCGCGcGGUaa -5'
22876 5' -57.2 NC_005137.2 + 129642 0.67 0.759637
Target:  5'- aCGCGUcaauAcguuucgaccgacacGUUGCCGCCGC-CGCCAc- -3'
miRNA:   3'- cGCGCA----U---------------CAAUGGCGGCGcGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 130190 0.67 0.765381
Target:  5'- -gGUGUAaacgUGCCGCCGCcaccuguaGCGCCAc- -3'
miRNA:   3'- cgCGCAUca--AUGGCGGCG--------CGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 95644 0.67 0.774858
Target:  5'- cCGCGUG-----CGCCGUGCGCCGa- -3'
miRNA:   3'- cGCGCAUcaaugGCGGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 61832 0.66 0.811377
Target:  5'- aGCGCGUcuUUGCCGagCGUgucuGCGCCAc- -3'
miRNA:   3'- -CGCGCAucAAUGGCg-GCG----CGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 46046 0.66 0.820116
Target:  5'- gGCGCcaacgaGGUuaUGCCGCCGCugcacagcguGCGCCGc- -3'
miRNA:   3'- -CGCGca----UCA--AUGGCGGCG----------CGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 88024 0.66 0.820116
Target:  5'- gGCGCGgcc--ACCGCCgagGCGgGCCAc- -3'
miRNA:   3'- -CGCGCaucaaUGGCGG---CGCgCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 123853 0.66 0.837064
Target:  5'- aGCGCGcGGcUUACaCGCCGCGCa----- -3'
miRNA:   3'- -CGCGCaUC-AAUG-GCGGCGCGcgguaa -5'
22876 5' -57.2 NC_005137.2 + 99942 0.66 0.837064
Target:  5'- cGCGCacgcauGUUggacaacggccGCgGCCGCGCGCCu-- -3'
miRNA:   3'- -CGCGcau---CAA-----------UGgCGGCGCGCGGuaa -5'
22876 5' -57.2 NC_005137.2 + 93904 0.67 0.746077
Target:  5'- gGCGCGUA--UGCCGCCauguuugcCGUGUCAUUg -3'
miRNA:   3'- -CGCGCAUcaAUGGCGGc-------GCGCGGUAA- -5'
22876 5' -57.2 NC_005137.2 + 85503 0.67 0.746077
Target:  5'- aGCGUGUAGUgACCGCaGgGCacgGCCAc- -3'
miRNA:   3'- -CGCGCAUCAaUGGCGgCgCG---CGGUaa -5'
22876 5' -57.2 NC_005137.2 + 43747 0.7 0.583213
Target:  5'- aGCGCGUAa-----GCUGCGCGCCAa- -3'
miRNA:   3'- -CGCGCAUcaauggCGGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 104432 0.7 0.614027
Target:  5'- cGCGUGUacaucuuggcAGUcgACaCGCCGCaGCGCCAc- -3'
miRNA:   3'- -CGCGCA----------UCAa-UG-GCGGCG-CGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 94291 0.69 0.634652
Target:  5'- cGCGCG-AGUUuaAUUGuUUGCGCGCCAUUa -3'
miRNA:   3'- -CGCGCaUCAA--UGGC-GGCGCGCGGUAA- -5'
22876 5' -57.2 NC_005137.2 + 100058 0.69 0.655268
Target:  5'- gGCGCGUucAGcaugcuuugUGCCGCgGCGCGCgGc- -3'
miRNA:   3'- -CGCGCA--UCa--------AUGGCGgCGCGCGgUaa -5'
22876 5' -57.2 NC_005137.2 + 104691 0.68 0.68603
Target:  5'- cGCGCGU-GUUAgaGuCCaGCGCGCCGc- -3'
miRNA:   3'- -CGCGCAuCAAUggC-GG-CGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 7177 0.68 0.713373
Target:  5'- cGCGCGc-GUUgcagcgcauuucgaACCGgCGCGUGCCGUc -3'
miRNA:   3'- -CGCGCauCAA--------------UGGCgGCGCGCGGUAa -5'
22876 5' -57.2 NC_005137.2 + 88944 0.68 0.716382
Target:  5'- cGCGCGUu----UCGCC-CGCGCCAa- -3'
miRNA:   3'- -CGCGCAucaauGGCGGcGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 56507 0.68 0.726366
Target:  5'- cGCGUGUAcggcGUUACguugGCCGCaaacGCGCCGUa -3'
miRNA:   3'- -CGCGCAU----CAAUGg---CGGCG----CGCGGUAa -5'
22876 5' -57.2 NC_005137.2 + 81320 1.07 0.002227
Target:  5'- gGCGCGUAGUUACCGCCGCGCGCCAUUg -3'
miRNA:   3'- -CGCGCAUCAAUGGCGGCGCGCGGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.