miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22876 5' -57.2 NC_005137.2 + 99197 0.68 0.696205
Target:  5'- aCGCGgcauuggGCCGCCGCaucgcuGCGCCAa- -3'
miRNA:   3'- cGCGCaucaa--UGGCGGCG------CGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 98807 0.66 0.820116
Target:  5'- cUGCcaaac-GCCGCCGUGCGCCGa- -3'
miRNA:   3'- cGCGcaucaaUGGCGGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 97190 0.66 0.820116
Target:  5'- -aGCGUcGUUGCCGCCGCcauuaaGCuCCGa- -3'
miRNA:   3'- cgCGCAuCAAUGGCGGCG------CGcGGUaa -5'
22876 5' -57.2 NC_005137.2 + 114400 0.66 0.811377
Target:  5'- cCGCGauUAGUcgaGCCGCCGCGCaUCAa- -3'
miRNA:   3'- cGCGC--AUCAa--UGGCGGCGCGcGGUaa -5'
22876 5' -57.2 NC_005137.2 + 30939 0.66 0.806054
Target:  5'- cGCGCGccgcGgcACaaagcaugcugaacgCGCCGCGCGCCGc- -3'
miRNA:   3'- -CGCGCau--CaaUG---------------GCGGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 95588 0.66 0.793413
Target:  5'- gGCGuUGUAGUUaaugAUgGgCGCGCGCCGa- -3'
miRNA:   3'- -CGC-GCAUCAA----UGgCgGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 11310 0.66 0.793413
Target:  5'- aUGCGUAcGUgcuaaGCUGUgugCGCGCGCCGUg -3'
miRNA:   3'- cGCGCAU-CAa----UGGCG---GCGCGCGGUAa -5'
22876 5' -57.2 NC_005137.2 + 15845 0.67 0.784205
Target:  5'- gGCGCGUuaacagcaAGUuaaacgacagUGCCGCCGgucaCGUGCCGc- -3'
miRNA:   3'- -CGCGCA--------UCA----------AUGGCGGC----GCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 84292 0.67 0.758676
Target:  5'- cGCGCGUGGaaacggugucgauguCCGuuGCGCGCg--- -3'
miRNA:   3'- -CGCGCAUCaau------------GGCggCGCGCGguaa -5'
22876 5' -57.2 NC_005137.2 + 73675 0.68 0.726366
Target:  5'- aCGCGaa-UUGCCGUCGCGC-CCAUUu -3'
miRNA:   3'- cGCGCaucAAUGGCGGCGCGcGGUAA- -5'
22876 5' -57.2 NC_005137.2 + 119740 0.68 0.706325
Target:  5'- aGCGCGUAGcggaCGUCaGCGCGCUg-- -3'
miRNA:   3'- -CGCGCAUCaaugGCGG-CGCGCGGuaa -5'
22876 5' -57.2 NC_005137.2 + 99363 0.66 0.828681
Target:  5'- -aGCGUGGUcgcguCCGCgCGCGUGCa--- -3'
miRNA:   3'- cgCGCAUCAau---GGCG-GCGCGCGguaa -5'
22876 5' -57.2 NC_005137.2 + 55703 0.69 0.675809
Target:  5'- uGCGCG-AGUUuucaaacgagacGCCGuuGCcCGCCGUUa -3'
miRNA:   3'- -CGCGCaUCAA------------UGGCggCGcGCGGUAA- -5'
22876 5' -57.2 NC_005137.2 + 51328 0.69 0.655268
Target:  5'- cGCaGCGgGGUcguCCGCCGCcGCGCCu-- -3'
miRNA:   3'- -CG-CGCaUCAau-GGCGGCG-CGCGGuaa -5'
22876 5' -57.2 NC_005137.2 + 70862 0.69 0.624336
Target:  5'- cGCGCaUGGUcaUGCUGCCGCGUGaCAa- -3'
miRNA:   3'- -CGCGcAUCA--AUGGCGGCGCGCgGUaa -5'
22876 5' -57.2 NC_005137.2 + 30736 0.71 0.532654
Target:  5'- uGgGCGUGaaUGCCGCgaCGCGCGCCcgUg -3'
miRNA:   3'- -CgCGCAUcaAUGGCG--GCGCGCGGuaA- -5'
22876 5' -57.2 NC_005137.2 + 7154 0.71 0.512858
Target:  5'- uGCGCGgcGUguaaGCCGCGCGCuCAc- -3'
miRNA:   3'- -CGCGCauCAauggCGGCGCGCG-GUaa -5'
22876 5' -57.2 NC_005137.2 + 127610 0.71 0.512858
Target:  5'- --aCGUGG-UACCGUCGCGCGUCAc- -3'
miRNA:   3'- cgcGCAUCaAUGGCGGCGCGCGGUaa -5'
22876 5' -57.2 NC_005137.2 + 63466 0.73 0.401722
Target:  5'- cGCGCGUuugUGCCGCCuCGCGgCGUUg -3'
miRNA:   3'- -CGCGCAucaAUGGCGGcGCGCgGUAA- -5'
22876 5' -57.2 NC_005137.2 + 32834 0.75 0.336663
Target:  5'- cGCGCGUAucUUAUCugugGCCGCGCGCCGg- -3'
miRNA:   3'- -CGCGCAUc-AAUGG----CGGCGCGCGGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.